Evidence map›Paper›PMID 27958775›Full record

ArticleStem cells and development2017

Distinct Molecular Signature of Murine Fetal Liver and Adult Hematopoietic Stem Cells Identify Novel Regulators of Hematopoietic Stem Cell Function.

Javed K Manesia, Monica Franch, Daniel Tabas-Madrid, Ruben Nogales-Cadenas, Thomas Vanwelden, Elisa Van Den Bosch, Zhuofei Xu, Alberto Pascual-Montano, Satish Khurana, Catherine M Verfaillie

Open access · greenAbstract read
In one paragraph

Article in Stem cells and development, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The evolving hematopoietic niche during development.Frontiers in molecular biosciences · 2024
    Review
  6. Article
  7. Ex Vivo Modeling of Hematopoietic Stem Cell Homing to the Fetal Liver.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. In Utero Transfer of Adeno-Associated Viral Vectors Produces Long-Term Factor IX Levels in a Cynomolgus Macaque Model.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Javed K Manesia1 Inter-Departmental Stem Cell Institute, KU Leuven , Leuven, Belgium .
Monica Franch3 Functional Bioinformatics Group, National Center for Biotechnology-CSIC , Madrid, Spain .
Daniel Tabas-Madrid3 Functional Bioinformatics Group, National Center for Biotechnology-CSIC , Madrid, Spain .
Ruben Nogales-Cadenas3 Functional Bioinformatics Group, National Center for Biotechnology-CSIC , Madrid, Spain .
Thomas Vanwelden1 Inter-Departmental Stem Cell Institute, KU Leuven , Leuven, Belgium .
Elisa Van Den Bosch1 Inter-Departmental Stem Cell Institute, KU Leuven , Leuven, Belgium .
Zhuofei Xu1 Inter-Departmental Stem Cell Institute, KU Leuven , Leuven, Belgium .
Alberto Pascual-Montano3 Functional Bioinformatics Group, National Center for Biotechnology-CSIC , Madrid, Spain .
Satish Khurana1 Inter-Departmental Stem Cell Institute, KU Leuven , Leuven, Belgium .
Catherine M Verfaillie1 Inter-Departmental Stem Cell Institute, KU Leuven , Leuven, Belgium .
Centro Nacional de Biotecnología · ESLeuven Institute for Fertility and Embryology · BEKU Leuven · BEIndian Institute of Science Education and Research Thiruvananthapuram · IN

Funding

DBT-Wellcome Trust India Alliance IA/I/15/2/502061
6 · The paper itself

Abstract

During ontogeny, fetal liver (FL) acts as a major site for hematopoietic stem cell (HSC) maturation and expansion, whereas HSCs in the adult bone marrow (ABM) are largely quiescent. HSCs in the FL possess faster repopulation capacity as compared with ABM HSCs. However, the molecular mechanism regulating the greater self-renewal potential of FL HSCs has not yet extensively been assessed. Recently, we published RNA sequencing-based gene expression analysis on FL HSCs from 14.5-day mouse embryo (E14.5) in comparison to the ABM HSCs. We reanalyzed these data to identify key transcriptional regulators that play important roles in the expansion of HSCs during development. The comparison of FL E14.5 with ABM HSCs identified more than 1,400 differentially expressed genes. More than 200 genes were shortlisted based on the gene ontology (GO) annotation term "transcription." By morpholino-based knockdown studies in zebrafish, we assessed the function of 18 of these regulators, previously not associated with HSC proliferation. Our studies identified a previously unknown role for tdg, uhrf1, uchl5, and ncoa1 in the emergence of definitive hematopoiesis in zebrafish. In conclusion, we demonstrate that identification of genes involved in transcriptional regulation differentially expressed between expanding FL HSCs and quiescent ABM HSCs, uncovers novel regulators of HSC function.

Indexed as

TranscriptomeAdult Stem CellsAnimalsCells, CulturedEmbryonic Stem CellsGene Expression Regulation, DevelopmentalHematopoiesisHematopoietic Stem CellsLiverMiceMice, Inbred C57BLTranscription FactorsZebrafishZebrafish ProteinsTranscription FactorsZebrafish ProteinshematopoiesisHSCzebrafish

Identifiers

PMID27958775
PMCPMC5961932
OpenAlexW2565970695

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.