Evidence map›Paper›PMID 27958277›Full record

ArticleScientific reports2016

A genome-wide screen of bacterial mutants that enhance dauer formation in C. elegans.

Amit Khanna, Jitendra Kumar, Misha A Vargas, LaKisha Barrett, Subhash Katewa, Patrick Li, Tom McCloskey, Amit Sharma, Nicole Naudé, Christopher Nelson and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Microbiology spectrum · 2025
    Article
  5. Iron-deplete diet enhancesbioRxiv : the preprint server for biology · 2025
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  6. Article
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  8. Article
  9. Bacteria-derived metabolite, methylglyoxal, modulates the longevity ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Modeling Host-Microbiome Interactions inJournal of nematology · 2017
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Amit KhannaBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Jitendra KumarBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Misha A VargasBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
LaKisha BarrettBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Subhash KatewaBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Patrick LiBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Tom McCloskeyBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Amit SharmaBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Nicole NaudéBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Christopher NelsonBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Rachel BremBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
David W KillileaNutrition &Metabolism Center, Children's Hospital Oakland Research Institute, 5700 Martin Luther King Jr. Way, Oakland, CA, USA.
Sean D MooneyDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, Washington 98195, USA.
Matthew GillDepartment of Metabolism &Aging, The Scripps Research Institute- Scripps Florida, Jupiter, Florida, 33458, USA.
Pankaj KapahiBuck Institute for Research on Aging, 8001 Redwood Blvd, Novato, USA.
Buck Institute for Research on Aging · USOakland University · USScripps Research Institute · USUniversity of Washington Medical Center · US

Funding

mRNA Translation, TOR and Geroscience (2 of 11)RL1AG032113 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ · 2007 to 2011
$3.2M
Molecular Mechanisms of Lifespan Extension by Dietary Restriction in DrosophilaR01AG038688 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ · 2011 to 2015
$2.3M
NIA NIH HHS R01 AG038688NIA NIH HHS RL1 AG032113
6 · The paper itself

Abstract

Molecular pathways involved in dauer formation, an alternate larval stage that allows Caenorhabditis elegans to survive adverse environmental conditions during development, also modulate longevity and metabolism. The decision to proceed with reproductive development or undergo diapause depends on food abundance, population density, and temperature. In recent years, the chemical identities of pheromone signals that modulate dauer entry have been characterized. However, signals derived from bacteria, the major source of nutrients for C. elegans, remain poorly characterized. To systematically identify bacterial components that influence dauer formation and aging in C. elegans, we utilized the individual gene deletion mutants in E. coli (K12). We identified 56 diverse E. coli deletion mutants that enhance dauer formation in an insulin-like receptor mutant (daf-2) background. We describe the mechanism of action of a bacterial mutant cyaA, that is defective in the production of cyclic AMP, which extends lifespan and enhances dauer formation through the modulation of TGF-β (daf-7) signaling in C. elegans. Our results demonstrate the importance of bacterial components in influencing developmental decisions and lifespan in C. elegans. Furthermore, we demonstrate that C. elegans is a useful model to study bacterial-host interactions.

Indexed as

AgingGene DeletionAnimalsCaenorhabditis elegansEscherichia coli K12Genome-Wide Association Study

Identifiers

PMID27958277
PMCPMC5153853
OpenAlexW2567228444

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.