Evidence map›Paper›PMID 27957856›Full record

ArticleACS chemical biology2017

High-throughput Identification of DNA-Encoded IgG Ligands that Distinguish Active and Latent Mycobacterium tuberculosis Infections.

Kimberly R Mendes, Marie Lynne Malone, John Maina Ndungu, Irena Suponitsky-Kroyter, Valerie J Cavett, Patrick J McEnaney, Andrew B MacConnell, Todd M Doran, Katharina Ronacher, Kim Stanley and 4 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
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  7. Identification and characterization of a nonbiological small-molecular mimic of a Zika virus conformational neutralizing epitope.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Small-molecule discovery through DNA-encoded libraries.Nature reviews. Drug discovery · 2023
    Review
  10. Article
  11. Article
  12. Synthesis and Screening of a DNA-Encoded Library of Non-Peptidic Macrocycles.Angewandte Chemie (International ed. in English) · 2022
    Article
  13. Review
  14. DNA-encoded library versus RNA-encoded library selection enables design of an oncogenic noncoding RNA inhibitor.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Review
  16. Review
  17. A systematic review of potential screening biomarkers for active TB disease.Journal of clinical tuberculosis and other mycobacterial diseases · 2021
    Review
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Kimberly R Mendes *Doctoral Program in the Chemical and Biological Sciences The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
Marie Lynne Malone *Department of Chemistry The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
John Maina NdunguOpko Health, Inc. 5353 Parkside Drive Jupiter, Florida 33458.
Irena Suponitsky-KroyterOpko Health, Inc. 5353 Parkside Drive Jupiter, Florida 33458.
Valerie J CavettDepartment of Chemistry The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
Patrick J McEnaneyDepartment of Chemistry The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
Andrew B MacConnellDepartment of Chemistry The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
Todd M DoranDepartment of Chemistry The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
Katharina RonacherDepartment of Science and Technology/National Research Foundation Centre of Excellence for Biomedical TB Research/Medical Research Council Centre for Molecular and Cellular Biology, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa.
Kim StanleyDepartment of Science and Technology/National Research Foundation Centre of Excellence for Biomedical TB Research/Medical Research Council Centre for Molecular and Cellular Biology, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa.
Ofelia UtsetOpko Health, Inc. 5353 Parkside Drive Jupiter, Florida 33458.
Gerhard WalzlDepartment of Science and Technology/National Research Foundation Centre of Excellence for Biomedical TB Research/Medical Research Council Centre for Molecular and Cellular Biology, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa.
Brian M PaegelDepartment of Chemistry The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
Thomas KodadekDepartment of Chemistry The Scripps Research Institute 130 Scripps Way Jupiter, FL 33458.
Scripps Research Institute · USOPKO Health (United States) · USStellenbosch University · ZA

Funding

Evolving and Engineering New Protease Tools for Mass Spectrometry ProteomicsDP2OD008535 · OD · SCRIPPS FLORIDA · PI PAEGEL, BRIAN M · 2011 to 2011
$3.0M
NIH HHS DP2 OD008535
6 · The paper itself

Abstract

The circulating antibody repertoire encodes a patient's health status and pathogen exposure history, but identifying antibodies with diagnostic potential usually requires knowledge of the antigen(s). We previously circumvented this problem by screening libraries of bead-displayed small molecules against case and control serum samples to discover "epitope surrogates" (ligands of IgGs enriched in the case sample). Here, we describe an improved version of this technology that employs DNA-encoded libraries and high-throughput FACS-based screening to discover epitope surrogates that differentiate noninfectious/latent (LTB) patients from infectious/active TB (ATB) patients, which is imperative for proper treatment selection and antibiotic stewardship. Normal control/LTB (10 patients each, NCL) and ATB (10 patients) serum pools were screened against a library (5 × 10

Indexed as

Mycobacterium tuberculosisAcyltransferasesAntigens, BacterialBacterial ProteinsDNAEpitopesEscherichia coliHigh-Throughput Screening AssaysHumansImmunoglobulin GLatent TuberculosisLigandsOligopeptidesPeptide LibrarySolid-Phase Synthesis TechniquesStructure-Activity RelationshipAcyltransferasesantigen 85B, Mycobacterium tuberculosisAntigens, BacterialBacterial ProteinsDNAEpitopesImmunoglobulin GLigandsOligopeptidesPeptide Library

Identifiers

PMID27957856
PMCPMC5250564
OpenAlexW2559724803

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.