Evidence map›Paper›PMID 27956585›Full record

ArticleThe Plant cell2016

ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes.

Julia Zinsmeister, David Lalanne, Emmanuel Terrasson, Emilie Chatelain, Céline Vandecasteele, Benoit Ly Vu, Cécile Dubois-Laurent, Emmanuel Geoffriau, Christine Le Signor, Marion Dalmais and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 1 pooled it
23.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 1 synthesis or guideline pooled it, 150 citations in OpenAlex.

  1. Pooled it
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21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Julia ZinsmeisterIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.
David LalanneIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.
Emmanuel TerrassonIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.
Emilie ChatelainIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.
Céline VandecasteeleIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.
Benoit Ly VuIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.
Cécile Dubois-LaurentIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.ORCID 0000-0001-7654-0132
Emmanuel GeoffriauIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.ORCID 0000-0003-4384-3107
Christine Le SignorAgroécologie, UMR1347, INRA, BP 86510, F-21000 Dijon, France.ORCID 0000-0002-3204-3537
Marion DalmaisInstitute of Plant Sciences Paris-Saclay, INRA, CNRS, Université Paris-Sud, Université d'Evry, Université Paris-Diderot, 91405 Orsay, France.ORCID 0000-0002-1673-3095
Katharina GutbrodInstitute of Molecular Physiology and Biotechnology of Plants, University of Bonn, 53115 Bonn, Germany.
Peter DörmannInstitute of Molecular Physiology and Biotechnology of Plants, University of Bonn, 53115 Bonn, Germany.
Karine GallardoAgroécologie, UMR1347, INRA, BP 86510, F-21000 Dijon, France.ORCID 0000-0002-2343-1941
Abdelhafid BendahmaneInstitute of Plant Sciences Paris-Saclay, INRA, CNRS, Université Paris-Sud, Université d'Evry, Université Paris-Diderot, 91405 Orsay, France.
Julia BuitinkIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France.ORCID 0000-0002-1457-764X
Olivier LeprinceIRHS, Agrocampus Ouest, INRA, Université d'Angers, SFR 4207 QUASAV, 49071 Beaucouzé, France olivier.leprince@agrocampus-ouest.fr.ORCID 0000-0003-1414-8690
Institut Agro Rennes-Angers · FRAgroécologie · FRUniversité Paris-Sud · FRUniversity of Bonn · DEIllumina (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The preservation of our genetic resources and production of high-quality seeds depends on their ability to remain viable and vigorous during storage. In a quantitative trait locus analysis on seed longevity in Medicago truncatula, we identified the bZIP transcription factor ABSCISIC ACID INSENSITIVE5 (ABI5). Characterization of Mt-abi5 insertion mutant seeds revealed that both the acquisition of longevity and dormancy were severely impaired. Using transcriptomes of developing Mt-abi5 seeds, we created a gene coexpression network and revealed ABI5 as a regulator of gene modules with functions related to raffinose family oligosaccharide (RFO) metabolism, late embryogenesis abundant (LEA) proteins, and photosynthesis-associated nuclear genes (PhANGs). Lower RFO contents in Mt-abi5 seeds were linked to the regulation of SEED IMBIBITION PROTEIN1 Proteomic analysis confirmed that a set of LEA polypeptides was reduced in mature Mt-abi5 seeds, whereas the absence of repression of PhANG in mature Mt-abi5 seeds was accompanied by chlorophyll and carotenoid retention. This resulted in a stress response in Mt-abi5 seeds, evident from an increase in α-tocopherol and upregulation of genes related to programmed cell death and protein folding. Characterization of abi5 mutants in a second legume species, pea (Pisum sativum), confirmed a role for ABI5 in the regulation of longevity, seed degreening, and RFO accumulation, identifying ABI5 as a prominent regulator of late seed maturation in legumes.

Indexed as

CarotenoidsChlorophyllGene Expression Regulation, PlantMedicago truncatulaPisum sativumPlant ProteinsSeedsTranscription FactorsCarotenoidsChlorophyllPlant ProteinsTranscription Factors

Identifiers

PMID27956585
PMCPMC5155344
OpenAlexW2549605440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.