Evidence map›Paper›PMID 27956489›Full record

ArticlePlant physiology2017

Physical Mapping of Amplified Copies of the 5-Enolpyruvylshikimate-3-Phosphate Synthase Gene in Glyphosate-Resistant Amaranthus tuberculatus.

Andrew Dillon, Vijay K Varanasi, Tatiana V Danilova, Dal-Hoe Koo, Sridevi Nakka, Dallas E Peterson, Patrick J Tranel, Bernd Friebe, Bikram S Gill, Mithila Jugulam

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Appearance of transient heteromorphic large chromosome in glyphosate-resistant Amaranthus tuberculatus.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  3. Article
  4. Article
  5. Frontiers in plant science · 2023
    Article
  6. Article
  7. Article
  8. Evolution of Glyphosate-Resistant Weeds.Reviews of environmental contamination and toxicology · 2021
    Review
  9. Fitness Cost Associated With EnhancedFrontiers in plant science · 2021
    Article
  10. Ribosomal DNA localization on Lathyrus species chromosomes by FISH.Journal, genetic engineering & biotechnology · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Multiple modes of convergent adaptation in the spread of glyphosate-resistantProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Fluorescence in situ hybridization in plants: recent developments and future applications.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
    Review
  16. Selective fertilization with phosphite allows unhindered growth of cotton plants expressing theProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Article
  18. Extrachromosomal circular DNA-based amplification and transmission of herbicide resistance in crop weedProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Andrew DillonDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).
Vijay K VaranasiDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).
Tatiana V DanilovaDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).ORCID 0000-0003-2209-1911
Dal-Hoe KooDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).
Sridevi NakkaDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).
Dallas E PetersonDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).
Patrick J TranelDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).ORCID 0000-0003-0666-4564
Bernd FriebeDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).
Bikram S GillDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.).ORCID 0000-0003-4510-9459
Mithila JugulamDepartment of Agronomy, Wheat Genetics Resource Center, Kansas State University, Manhattan, Kansas 66506 (A.D., V.K.V., S.N., D.E.P., M.J.); mithila@ksu.edu.ORCID 0000-0003-2065-9067
University of Illinois Urbana-Champaign · USKansas State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent and rapid evolution of resistance to glyphosate, the most widely used herbicides, in several weed species, including common waterhemp (Amaranthus tuberculatus), poses a serious threat to sustained crop production. We report that glyphosate resistance in A tuberculatus was due to amplification of the 5-enolpyruvylshikimate-3-P synthase (EPSPS) gene, which encodes the molecular target of glyphosate. There was a positive correlation between EPSPS gene copies and its transcript expression. We analyzed the distribution of EPSPS copies in the genome of A tuberculatus using fluorescence in situ hybridization on mitotic metaphase chromosomes and interphase nuclei. Fluorescence in situ hybridization analysis mapped the EPSPS gene to pericentromeric regions of two homologous chromosomes in glyphosate sensitive A tuberculatus In glyphosate-resistant plants, a cluster of EPSPS genes on the pericentromeric region on one pair of homologous chromosomes was detected. Intriguingly, two highly glyphosate-resistant plants harbored an additional chromosome with several EPSPS copies besides the native chromosome pair with EPSPS copies. These results suggest that the initial event of EPSPS gene duplication may have occurred because of unequal recombination mediated by repetitive DNA. Subsequently, gene amplification may have resulted via several other mechanisms, such as chromosomal rearrangements, deletion/insertion, transposon-mediated dispersion, or possibly by interspecific hybridization. This report illustrates the physical mapping of amplified EPSPS copies in A tuberculatus.

Indexed as

3-Phosphoshikimate 1-CarboxyvinyltransferaseAmaranthusChromosomes, PlantDose-Response Relationship, DrugGene Expression Regulation, PlantGlycineGlyphosateHerbicide ResistanceHerbicidesKansasPhysical Chromosome MappingPlant Proteins3-Phosphoshikimate 1-CarboxyvinyltransferaseGlycineGlyphosateHerbicidesPlant Proteins

Identifiers

PMID27956489
PMCPMC5291031
OpenAlexW2567093564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.