Evidence map›Paper›PMID 27955635›Full record

ArticleBMC infectious diseases2016

Molecular characterization and evaluation of the emerging antibiotic-resistant Streptococcus pyogenes from eastern India.

Dipanwita Ray, Somnath Saha, Sukanta Sinha, Nishith Kumar Pal, Basudev Bhattacharya

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Review
  5. Article
  6. Group AOman medical journal · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Dipanwita RayBiochemistry Research Wing, Department of Biochemistry, Dr. B C Roy Post Graduate Institute of Basic Medical Education and Research (IPGME&R), 244B, A J C Bose Road, Kolkata, 700020, India. rdipanwita8@gmail.com.
Somnath SahaNil Ratan Sarkar Medical College and Hospital, Kolkata, India.
Sukanta SinhaThe West Bengal University of Health Sciences, Kolkata, India.
Nishith Kumar PalNil Ratan Sarkar Medical College and Hospital, Kolkata, India.
Basudev BhattacharyaBiochemistry Research Wing, Department of Biochemistry, Dr. B C Roy Post Graduate Institute of Basic Medical Education and Research (IPGME&R), 244B, A J C Bose Road, Kolkata, 700020, India. bbasudev@rediffmail.com.
Institute of Post Graduate Medical Education and Research · INMedical College and Hospital, Kolkata · INNil Ratan Sircar Medical College and Hospital · INWest Bengal University of Health Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGroup A Streptococcus strains causing wide variety of diseases, recently became noticeable in eastern India, are not amenable to standard treatment protocol thus enhancing the possibility of disease morbidity by becoming antibiotic resistance.

methodsThe association of Lancefield group A Streptococcal variation with degree of vir architectural diversity was evaluated using emm typing and restriction fragment length polymorphism analyses. The antibiotic sensitivity patterns were examined by modified Kirby-Bauer method of disk diffusion. Percentage calculations, 95% confidence interval and one-way ANOVA were used to assess differences in proportions.

resultsOur observations revealed 20 different emm types and 13 different HaeIII vir typing patterns. A 1.2 kb fragment was found in all HaeIII typing pattern. Fragments of 1.2 kb and 550 bp were conserved in majority of the isolates. HinfI digestion was found proficient in differentiating the strains of same vir typing patterns. Strong predominance of speC (85%) and speF (80%) genes have been observed encoding exotoxins production. 4 isolates were found to be erythromycin resistant and were of genotype emm49. High degree of tetracycline resistance was shown by 53.57% isolates which belonged to 12 different emm genotypes.

conclusionsThese findings suggested that in addition to emm typing, sequential application of HaeIII and HinfI restriction enzymes in vir typing analysis is an effective tool for group A streptococcal molecular characterization associated with antibiotic resistance.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsDNA, BacterialDrug Resistance, BacterialErythromycinExotoxinsGenotypeHumansIndiaMolecular TypingPolymorphism, Restriction Fragment LengthStreptococcal InfectionsStreptococcus pyogenesAnti-Bacterial AgentsBacterial ProteinsDNA, Bacterialerythrogenic toxinErythromycinExotoxinsAntibiotic sensitivity patternsemm typingExotoxin geneRestriction enzyme digestionStreptococcus pyogenes (GAS)vir typingVirulence regulon

Identifiers

PMID27955635
PMCPMC5153692
OpenAlexW2563176565

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.