Evidence map›Paper›PMID 27942959›Full record

ArticlePlant molecular biology2017

The PPR protein SLOW GROWTH 4 is involved in editing of nad4 and affects the splicing of nad2 intron 1.

Stefan Weißenberger, Jürgen Soll, Chris Carrie

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Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. PPR596 Is Required forInternational journal of molecular sciences · 2024
    Article
  6. Review
  7. Article
  8. International journal of molecular sciences · 2022
    Article
  9. Article
  10. Functions of PPR Proteins in Plant Growth and Development.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Stefan WeißenbergerDepartment of Biology I, Botany, Ludwig-Maximilians-Universität München, Großhaderner Strasse 2-4, 82152, Planegg-Martinsried, Germany.
Jürgen SollDepartment of Biology I, Botany, Ludwig-Maximilians-Universität München, Großhaderner Strasse 2-4, 82152, Planegg-Martinsried, Germany.
Chris CarrieDepartment of Biology I, Botany, Ludwig-Maximilians-Universität München, Großhaderner Strasse 2-4, 82152, Planegg-Martinsried, Germany. christopher.carrie@lmu.de.ORCID http://orcid.org/0000-0002-4240-4674

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageSLO4 is a mitochondrial PPR protein that is involved in editing nad4, possibly required for the efficient splicing of nad2 intron1. Pentatricopeptide repeat (PPR) proteins constitute a large protein family in flowering plants and are thought to be mostly involved in organellar RNA metabolism. The subgroup of PLS-type PPR proteins were found to be the main specificity factors of cytidine to uridine RNA editing. Identifying the targets of PLS-type PPR proteins can help in elucidating the molecular function of proteins encoded in the organellar genomes. In this study, plants lacking the SLOW GROWTH 4 PPR protein were characterized. Slo4 mutants were characterized as having restricted root growth, being late flowering and displaying an overall delayed growth phenotype. Protein levels and activity of mitochondrial complex I were decreased and putative complex I assembly intermediates accumulated in the mutant plants. An editing defect, leading to an amino acid change, in the mitochondrial nad4 transcript, encoding for a complex I subunit, was identified. Furthermore, the splicing efficiency of the first intron of nad2, encoding for another complex I subunit, was also decreased. The change in splicing efficiency could however not be linked to any editing defects in the nad2 transcript.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsBase SequenceElectron Transport Complex IImmunoblottingMitochondrial ProteinsMutationNADH DehydrogenasePhenotypePlants, Genetically ModifiedRNA EditingRNA SplicingSequence Homology, Amino AcidSequence Homology, Nucleic AcidArabidopsis ProteinsElectron Transport Complex IMitochondrial ProteinsNAD4 protein, ArabidopsisNADH DehydrogenasendhG protein, ArabidopsisSLO4 protein, ArabidopsisComplex IMitochondriaPentatricopeptide repeatRNA editingSplicing

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.