Evidence map›Paper›PMID 27942958›Full record

ArticlePlant molecular biology2017

ABI5-binding proteins (AFPs) alter transcription of ABA-induced genes via a variety of interactions with chromatin modifiers.

Tim J Lynch, B Joy Erickson, Dusty R Miller, Ruth R Finkelstein

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
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  4. AHG1-AFP interaction as a regulatory node in the ABA response during seed germination.The Plant journal : for cell and molecular biology · 2026
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  7. Identification of CsAFP3-like as a novel gene regulating determinate growth of lateral branch in cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  14. Distinct guard cell-specific remodeling of chromatin accessibility during abscisic acid- and COProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tim J LynchMolecular, Cellular, and Developmental Biology Department, University of California at Santa Barbara, Santa Barbara, CA, 93106, USA.
B Joy EricksonBiomolecular Science and Engineering Program, University of California at Santa Barbara, Santa Barbara, CA, 93106, USA.
Dusty R MillerBiomolecular Science and Engineering Program, University of California at Santa Barbara, Santa Barbara, CA, 93106, USA.
Ruth R FinkelsteinMolecular, Cellular, and Developmental Biology Department, University of California at Santa Barbara, Santa Barbara, CA, 93106, USA. finkelst@lifesci.ucsb.edu.ORCID http://orcid.org/0000-0001-7702-3778
University of California, Santa Barbara · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageOverexpression of ABI5/ABF binding proteins (AFPs) results in extreme ABA resistance of seeds via multiple mechanisms repressing ABA response, including interactions with histone deacetylases and the co-repressor TOPLESS. Several ABI5/ABF binding proteins (AFPs) inhibit ABA response, resulting in extreme ABA resistance in transgenic Arabidopsis overexpression lines, but their mechanism of action has remained obscure. By analogy to the related Novel Interactor of JAZ (NINJA) protein, it was suggested that the AFPs interact with the co-repressor TOPLESS to inhibit ABA-regulated gene expression. This study shows that the AFPs that inhibit ABA response have intrinsic repressor activity in a heterologous system, which does not depend on the domain involved in the interaction with TOPLESS. This domain is also not essential for repressing ABA response in transgenic plants, but does contribute to stronger ABA resistance. Additional interactions between some AFPs and histone deacetylase subunits were observed in yeast two-hybrid and bimolecular fluorescence assays, consistent with a more direct mechanism of AFP-mediated repression of gene expression. Chemical inhibition of histone deacetylase activity by trichostatin A suppressed AFP effects on a small fraction of the ABI5-regulated genes tested. Collectively, these results suggest that the AFPs participate in multiple mechanisms modulating ABA response, including both TOPLESS-dependent and -independent chromatin modification.

Indexed as

Abscisic AcidArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCarrier ProteinsChromatinGene Expression Regulation, PlantHistone DeacetylasesImmunoblottingIntracellular Signaling Peptides and ProteinsMicroscopy, FluorescencePlant Growth RegulatorsPlants, Genetically ModifiedProtein BindingReverse Transcriptase Polymerase Chain ReactionTwo-Hybrid System TechniquesABI5 protein, ArabidopsisAbscisic AcidAFP1 protein, ArabidopsisAFP2 protein, ArabidopsisArabidopsis ProteinsAt1g15750 protein, ArabidopsisBasic-Leucine Zipper Transcription FactorsCarrier ProteinsChromatinHistone DeacetylasesIntracellular Signaling Peptides and ProteinsPlant Growth RegulatorsABA-INSENSITIVE(ABI5)AFPArabidopsisChromatinGerminationHistone deacetylase

Identifiers

PMID27942958
OpenAlexW2560013834

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.