ArticleGenomics data2017
Insights into bacterioplankton community structure from Sundarbans mangrove ecoregion using Sanger and Illumina MiSeq sequencing approaches: A comparative analysis.
Article in Genomics data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed.
- Genomic insights into Brevibacterium sediminis strain IMA_C3 isolated from an integrated mangrove aquaculture pond.Access microbiology · 2026Article
- Genome description of a potentially novel species of Billgrantia sp. strain SL18_1 isolated from Sambhar Lake, India.Access microbiology · 2026Article
- Genome description of a potentially novel species of Rossellomorea sp. strain H39_3 isolated from the Hindon River, India.Access microbiology · 2026Article
- Insights into the genome of Azotobacter sp. strain CWF10, isolated from an agricultural field in Central India.Access microbiology · 2025Article
- Article
- Delving deep into the draft genome of Mangrovibacter sp. SLW1, isolated from Sundarbans mangrove.Access microbiology · 2024Article
- Article
- Vibrio chemaguriensis sp. nov., from Sundarbans, Bay of Bengal.Current microbiology · 2019Article
- Exploring biogeographic patterns of bacterioplankton communities across global estuaries.MicrobiologyOpen · 2019Article
- Changes in the Soil Microbiome in Eggplant Monoculture Revealed by High-Throughput Illumina MiSeq Sequencing as Influenced by Raw Garlic Stalk Amendment.International journal of molecular sciences · 2019Article
- Haemolymph microbiome of the cultured spiny lobster Panulirus ornatus at different temperatures.Scientific reports · 2019Article
- Article
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2 authors.
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Abstract
Next generation sequencing using platforms such as Illumina MiSeq provides a deeper insight into the structure and function of bacterioplankton communities in coastal ecosystems compared to traditional molecular techniques such as clone library approach which incorporates Sanger sequencing. In this study, structure of bacterioplankton communities was investigated from two stations of Sundarbans mangrove ecoregion using both Sanger and Illumina MiSeq sequencing approaches. The Illumina MiSeq data is available under the BioProject ID PRJNA35180 and Sanger sequencing data under accession numbers KX014101-KX014140 (Stn1) and KX014372-KX014410 (Stn3). Proteobacteria-, Firmicutes- and Bacteroidetes-like sequences retrieved from both approaches appeared to be abundant in the studied ecosystem. The Illumina MiSeq data (2.1 GB) provided a deeper insight into the structure of bacterioplankton communities and revealed the presence of bacterial phyla such as Actinobacteria, Cyanobacteria, Tenericutes, Verrucomicrobia which were not recovered based on Sanger sequencing. A comparative analysis of bacterioplankton communities from both stations highlighted the presence of genera that appear in both stations and genera that occur exclusively in either station. However, both the Sanger sequencing and Illumina MiSeq data were coherent at broader taxonomic levels.
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