ArticleMolecular breeding : new strategies in plant improvement2016
Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: a case study in oil palm (
Article in Molecular breeding : new strategies in plant improvement, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Integrative linkage mapping and transcriptomic profiling uncover ozone-response modules in a peri-urban forest tree.G3 (Bethesda, Md.) · 2026Article
- Introgression of barley chromosome arms 4H and 6H into wheat via Robertsonian translocations: GBS-assisted structural analysis and impact on grain nutrient composition.Plant molecular biology · 2026Article
- Detection of De Novo Mutations by Sequencing Reduced Representation Libraries.Methods in molecular biology (Clifton, N.J.) · 2025Article
- Double-digest restriction-associated DNA sequencing-based genotyping and its applications in sesame germplasm management.The plant genome · 2024Article
- Climate and Soil Microsite Conditions Determine Local Adaptation in Declining Silver Fir Forests.Plants (Basel, Switzerland) · 2023Article
- Tree-Level Growth Patterns and Genetic Associations Depict Drought Legacies in the Relict Forests ofPlants (Basel, Switzerland) · 2023Article
- Population structure and hybridization under contemporary and future climates in a heteroploid foundational shrub species (Frontiers in plant science · 2023Article
- Genomic selection for morphological and yield-related traits using genome-wide SNPs in oil palm.Molecular breeding : new strategies in plant improvement · 2022Article
- Sorghum Association Panel whole-genome sequencing establishes cornerstone resource for dissecting genomic diversity.The Plant journal : for cell and molecular biology · 2022Article
- Genotyping by Sequencing Advancements in Barley.Frontiers in plant science · 2022Review
- Facilitating population genomics of non-model organisms through optimized experimental design for reduced representation sequencing.BMC genomics · 2021Article
- Article
- ddRAD Sequencing-Based Identification of Genomic Boundaries and Permeability inFrontiers in plant science · 2020Article
- A cost-effective approach to DNA methylation detection by Methyl Sensitive DArT sequencing.PloS one · 2020Article
- QTL mapping and GWAS reveal candidate genes controlling capsaicinoid content in Capsicum.Plant biotechnology journal · 2018Article
- Construction of a highly saturated linkage map in Japanese plum (Prunus salicina L.) using GBS for SNP marker calling.PloS one · 2018Article
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Advances in next generation sequencing have facilitated a large-scale single nucleotide polymorphism (SNP) discovery in many crop species. Genotyping-by-sequencing (GBS) approach couples next generation sequencing with genome complexity reduction techniques to simultaneously identify and genotype SNPs. Choice of enzymes used in GBS library preparation depends on several factors including the number of markers required, the desired level of multiplexing, and whether the enrichment of genic SNP is preferred. We evaluated various combinations of methylation-sensitive (
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