Evidence map›Paper›PMID 27941970›Full record

ArticlePLoS genetics2016

Extensive Regulation of Diurnal Transcription and Metabolism by Glucocorticoids.

Benjamin D Weger, Meltem Weger, Benjamin Görling, Andrea Schink, Cédric Gobet, Céline Keime, Gernot Poschet, Bernard Jost, Nils Krone, Rüdiger Hell and 3 more

Abstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Combined Pituitary Hormone Deficiency inInternational journal of molecular sciences · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Antioxidants (Basel, Switzerland) · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. MicroRNA-resistant alleles ofScience advances · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Benjamin D WegerInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, Germany.
Meltem WegerInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, Germany.
Benjamin GörlingInstitute for Organic Chemistry, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, Germany.ORCID http://orcid.org/0000-0003-2927-3152
Andrea SchinkInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, Germany.
Cédric GobetNestlé Institute of Health Sciences SA, EPFL Innovation Park, Bâtiment H, Lausanne, Switzerland.
Céline KeimePlateforme Biopuces et séquençage, IGBMC, 1 rue Laurent Fries, Parc d'Innovation, Illkirch, France.
Gernot PoschetCentre for Organismal Studies (COS), University of Heidelberg, Heidelberg, Germany.
Bernard JostPlateforme Biopuces et séquençage, IGBMC, 1 rue Laurent Fries, Parc d'Innovation, Illkirch, France.
Nils KroneAcademic Unit of Child Health, Department of Oncology and Metabolism, University of Sheffield, Sheffield, United Kingdom.ORCID http://orcid.org/0000-0002-3402-4727
Rüdiger HellCentre for Organismal Studies (COS), University of Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-6238-4818
Frédéric GachonNestlé Institute of Health Sciences SA, EPFL Innovation Park, Bâtiment H, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-9279-9707
Burkhard LuyInstitute for Organic Chemistry, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, Germany.ORCID http://orcid.org/0000-0001-9580-6397
Thomas DickmeisInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Altered daily patterns of hormone action are suspected to contribute to metabolic disease. It is poorly understood how the adrenal glucocorticoid hormones contribute to the coordination of daily global patterns of transcription and metabolism. Here, we examined diurnal metabolite and transcriptome patterns in a zebrafish glucocorticoid deficiency model by RNA-Seq, NMR spectroscopy and liquid chromatography-based methods. We observed dysregulation of metabolic pathways including glutaminolysis, the citrate and urea cycles and glyoxylate detoxification. Constant, non-rhythmic glucocorticoid treatment rescued many of these changes, with some notable exceptions among the amino acid related pathways. Surprisingly, the non-rhythmic glucocorticoid treatment rescued almost half of the entire dysregulated diurnal transcriptome patterns. A combination of E-box and glucocorticoid response elements is enriched in the rescued genes. This simple enhancer element combination is sufficient to drive rhythmic circadian reporter gene expression under non-rhythmic glucocorticoid exposure, revealing a permissive function for the hormones in glucocorticoid-dependent circadian transcription. Our work highlights metabolic pathways potentially contributing to morbidity in patients with glucocorticoid deficiency, even under glucocorticoid replacement therapy. Moreover, we provide mechanistic insight into the interaction between the circadian clock and glucocorticoids in the transcriptional regulation of metabolism.

Indexed as

AnimalsCircadian ClocksCircadian RhythmCitric AcidCLOCK ProteinsE-Box ElementsGene Expression RegulationGlucocorticoidsHigh-Throughput Nucleotide SequencingHormonesHumansMagnetic Resonance SpectroscopyMetabolic Networks and PathwaysTranscription, GeneticTranscriptomeUreaCitric AcidCLOCK ProteinsGlucocorticoidsHormonesUrea

Identifiers

PMID27941970
PMCPMC5191836

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.