Evidence map›Paper›PMID 27941943›Full record

ArticleScientific reports2016

Transcriptomic insights into the allelopathic effects of the garlic allelochemical diallyl disulfide on tomato roots.

Fang Cheng, Zhi-Hui Cheng, Huan-Wen Meng

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Physiological and molecular insights into the allelopathic effects on agroecosystems under changing environmental conditions.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Identification and Allelopathy of Green Garlic (Molecules (Basel, Switzerland) · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Fang ChengCollege of Horticulture, Northwest A&F University, Taicheng Road No. 3,Yangling, Shaanxi 712100 China.
Zhi-Hui ChengCollege of Horticulture, Northwest A&F University, Taicheng Road No. 3,Yangling, Shaanxi 712100 China.
Huan-Wen MengCollege of Horticulture, Northwest A&F University, Taicheng Road No. 3,Yangling, Shaanxi 712100 China.
Northwest A&F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Garlic is an allelopathic crop that can alleviate the obstacles to continuous cropping of vegetable crops. Diallyl disulfide (DADS), one of the most important allelochemicals in garlic, promotes tomato root growth. Therefore, the global transcriptome profiles of DADS-treated tomato roots over time were investigated to reveal the potential growth-promoting mechanisms. We detected 1828, 1296 and 1190 differentially expressed genes (DEGs) in the 4, 24 and 48 h samples, respectively. Most DEGs involved in assimilatory sulfate reduction and glutathione metabolism were up-regulated after short-term (4 h) DADS treatment. In addition, increased activity of defensive enzymes and up-regulation of six peroxidase genes were observed, suggesting that DADS could induce tomato resistance. In plant-pathogen interactions, DEGs related to calcium signaling were primarily inhibited, while those encoding pathogenesis-related proteins were primarily up-regulated. Although plant hormone synthesis and signal transduction were both significantly affected by DADS, the expression trends of the genes in these two pathways were conflicting. This research provides comprehensive information concerning the changes in the tomato root transcriptome affected by DADS and may help direct further studies on DADS-responsive genes to enhance the current understanding of the mechanisms by which DADS alleviates the obstacles to continuous cropping.

Indexed as

Allyl CompoundsCalcium SignalingDisulfidesGarlicGene Expression Regulation, PlantGene LibraryGene OntologyHost-Pathogen InteractionsLipid PeroxidationOxidative StressPheromonesPlant Growth RegulatorsPlant RootsSolanum lycopersicumTranscriptomeAllyl Compoundsdiallyl disulfideDisulfidesPheromonesPlant Growth Regulators

Identifiers

PMID27941943
PMCPMC5150855
OpenAlexW2564077661

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.