Evidence map›Paper›PMID 27941246›Full record

ArticleThe Journal of clinical investigation2017

LIM domain-binding 1 maintains the terminally differentiated state of pancreatic β cells.

Benjamin N Ediger, Hee-Woong Lim, Christine Juliana, David N Groff, LaQueena T Williams, Giselle Dominguez, Jin-Hua Liu, Brandon L Taylor, Erik R Walp, Vasumathi Kameswaran and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
10.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 68 citations in OpenAlex.

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  12. The Ldb1 transcriptional co-regulator is required for establishment and maintenance of the pancreatic endocrine lineage.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Benjamin N Ediger
Hee-Woong Lim
Christine Juliana
David N Groff
LaQueena T Williams
Giselle Dominguez
Jin-Hua Liu
Brandon L Taylor
Erik R Walp
Vasumathi Kameswaran
Juxiang Yang
Chengyang Liu
Chad S Hunter
Klaus H Kaestner
Ali Naji
Changhong Li
Maike Sander
Roland Stein
Lori Sussel
Kyoung-Jae Won
Catherine Lee May
Doris A Stoffers
Institute of Nutrition, Metabolism and Diabetes · CAChildren's Hospital of Philadelphia · USNational Institute of Child Health · HUSanford Consortium for Regenerative Medicine · USVanderbilt University · USUniversity of Alabama at Birmingham · US

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Patrick Seale · 1986 to 2026
$48.3M
ZINC FINGER PROTEINS IN EARLY KIDNEY DEVELOPMENTP01DK049210 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KAESTNER, KLAUS H · 1995 to 2016
$26.9M
TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM007229 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1985 to 2023
$14.0M
Regulation of Pancreatic Islet Cell FateR01DK082590 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LORI SUSSEL · 2009 to 2026
$7.3M
Nkx6 gene function in pancreas developmentR01DK068471 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI WORTHAM, MATTHEW · 2004 to 2024
$6.6M
TRAINING PROGRAM IN DEVELOPMENTAL BIOLOGYT32HD007516 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI RAPER, JONATHAN A · 1998 to 2012
$5.6M
Transcriptional Coregulators in Pancreas DevelopmentR01DK068157 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI STOFFERS, DORIS A · 2005 to 2013
$3.3M
Transcriptional Regulation of Pancreas Development and FunctionR01DK078606 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI MAY, CATHERINE LEE · 2008 to 2012
$2.6M
Transcriptional Regulation of Pancreas Development and FunctionR56DK078606 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI MAY, CATHERINE LEE · 2007 to 2007
$124k
NICHD NIH HHS T32 HD007516NIDDK NIH HHS P01 DK049210NIDDK NIH HHS P30 DK019525NIDDK NIH HHS R01 DK068157NIDDK NIH HHS R01 DK068471NIDDK NIH HHS R01 DK078606NIDDK NIH HHS R01 DK082590NIDDK NIH HHS R56 DK078606NIGMS NIH HHS T32 GM007229
6 · The paper itself

Abstract

The recognition of β cell dedifferentiation in type 2 diabetes raises the translational relevance of mechanisms that direct and maintain β cell identity. LIM domain-binding protein 1 (LDB1) nucleates multimeric transcriptional complexes and establishes promoter-enhancer looping, thereby directing fate assignment and maturation of progenitor populations. Many terminally differentiated endocrine cell types, however, remain enriched for LDB1, but its role is unknown. Here, we have demonstrated a requirement for LDB1 in maintaining the terminally differentiated status of pancreatic β cells. Inducible ablation of LDB1 in mature β cells impaired insulin secretion and glucose homeostasis. Transcriptomic analysis of LDB1-depleted β cells revealed the collapse of the terminally differentiated gene program, indicated by a loss of β cell identity genes and induction of the endocrine progenitor factor neurogenin 3 (NEUROG3). Lineage tracing confirmed that LDB1-depleted, insulin-negative β cells express NEUROG3 but do not adopt alternate endocrine cell fates. In primary mouse islets, LDB1 and its LIM homeodomain-binding partner islet 1 (ISL1) were coenriched at chromatin sites occupied by pancreatic and duodenal homeobox 1 (PDX1), NK6 homeobox 1 (NKX6.1), forkhead box A2 (FOXA2), and NK2 homeobox 2 (NKX2.2) - factors that co-occupy active enhancers in 3D chromatin domains in human islets. Indeed, LDB1 was enriched at active enhancers in human islets. Thus, LDB1 maintains the terminally differentiated state of β cells and is a component of active enhancers in both murine and human islets.

Indexed as

Cell DifferentiationAnimalsBasic Helix-Loop-Helix ProteinsDiabetes Mellitus, Type 2DNA-Binding ProteinsHepatocyte Nuclear Factor 3-betaHomeobox Protein Nkx-2.2Homeodomain ProteinsHumansInsulin-Secreting CellsLIM Domain ProteinsLIM-Homeodomain ProteinsMiceMice, TransgenicNerve Tissue ProteinsNuclear ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsFOXA2 protein, humanFoxa2 protein, mouseHepatocyte Nuclear Factor 3-betaHomeobox Protein Nkx-2.2Homeodomain Proteinsinsulin gene enhancer binding protein Isl-1LDB1 protein, humanLdb1 protein, mouseLIM Domain ProteinsLIM-Homeodomain ProteinsNerve Tissue ProteinsNEUROG3 protein, humanNeurog3 protein, mousenkx2.2b protein, zebrafishNKX2-2 protein, humanNkx2-2 protein, mouseNKX6-1 protein, humanNkx6-1 protein, mouseNuclear Proteinspancreatic and duodenal homeobox 1 proteinTrans-ActivatorsTranscription FactorsZebrafish Proteins

Identifiers

PMID27941246
PMCPMC5199701
OpenAlexW2559853954

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.