Evidence map›Paper›PMID 27940592›Full record

ArticleRheumatology (Oxford, England)2017

CD3Z hypermethylation is associated with severe clinical manifestations in systemic lupus erythematosus and reduces CD3ζ-chain expression in T cells.

Kyeong-Man Hong, Hyun-Kyoung Kim, Seong-Yeol Park, Shiv Poojan, Mi-Kyung Kim, Joohon Sung, Betty P Tsao, Jennifer M Grossman, Ornella J Rullo, Jennifer M P Woo and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Rheumatology (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Methylation of T and B Lymphocytes in Autoimmune Rheumatic Diseases.Clinical reviews in allergy & immunology · 2024
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Epigenetics of inflammatory arthritis.Current opinion in rheumatology · 2018
    Review
  8. Article
  9. Review
  10. Epigenetic involvement in etiopathogenesis and implications in treatment of systemic lupus erythematous.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2017
    Review
  11. SLE-Associated Defects Promote Altered T Cell Function.Critical reviews in immunology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Kyeong-Man HongResearch Institute, National Cancer Center, Goyang.
Hyun-Kyoung KimResearch Institute, National Cancer Center, Goyang.
Seong-Yeol ParkResearch Institute, National Cancer Center, Goyang.
Shiv PoojanResearch Institute, National Cancer Center, Goyang.
Mi-Kyung KimResearch Institute, National Cancer Center, Goyang.
Joohon SungDepartment of Epidemiology, School of Public Health, Seoul National University, Seoul, Korea.
Betty P TsaoDepartment of Medicine-Rheumatology.
Jennifer M GrossmanDepartment of Medicine-Rheumatology.
Ornella J RulloDivision of Pediatric Rheumatology, David Geffen School of Medicine, University of California, Los Angeles, CA.
Jennifer M P WooDivision of Pediatric Rheumatology, David Geffen School of Medicine, University of California, Los Angeles, CA.
Deborah K McCurdyDivision of Pediatric Rheumatology, David Geffen School of Medicine, University of California, Los Angeles, CA.
Lisa G RiderDepartment of Health and Human Services, Environmental Autoimmunity Group, National Institute of Environmental Health Sciences, National Institutes of Health, Bethesda, MD, USA.
Frederick W MillerDepartment of Health and Human Services, Environmental Autoimmunity Group, National Institute of Environmental Health Sciences, National Institutes of Health, Bethesda, MD, USA.
Yeong-Wook SongDepartment of Internal Medicine.
University of California, Los Angeles · USNational Institutes of Health · USSeoul National University · KR

Funding

Environmental/genetic Risk Factors and Pathogenesis of Autoimmune DiseaseZIAES101074 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI RIDER, LISA · 2009 to 2025
$34.6M
CHROMOSOME REGIONS LINKED TO SLE IN MULTIPLEX FAMILIESR01AR043814 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TSAO, BETTY P · 1997 to 2012
$5.7M
NIAMS NIH HHS R01 AR043814
6 · The paper itself

Abstract

Objective: The importance of hypomethylation in SLE is well recognized; however, the significance of hypermethylation has not been well characterized. We screened hypermethylated marks in SLE and investigated their possible implications. Methods: DNA methylation marks were screened in SLE whole-blood DNA by microarray, and two marks ( CD3Z and VHL hypermethylations) were confirmed by a methylation single-base extension method in two independent ethnic cohorts consisting of 207 SLE patients and 151 controls. The correlation with clinical manifestations and the genetic influence on those epigenetic marks were analysed. Results: Two epigenetic marks, CD3Z and VHL hypermethylation, were significantly correlated with SLE: CD3Z hypermethylation (odds ratio = 7.76; P = 1.71 × 10 -13 ) and VHL hypermethylation (odds ratio = 3.77; P = 3.20 × 10 -8 ), and the increased CD3Z methylation was correlated with downregulation of the CD3ζ-chain in SLE T cells. In addition, less genetic influence on CD3Z methylation relative to VHL methylation was found in analyses of longitudinal and twin samples. Furthermore, a higher CD3Z methylation level was significantly correlated with a higher SLE disease activity index and more severe clinical manifestations, such as proteinuria, haemolytic anaemia and thrombocytopenia, whereas VHL hypermethylation was not. Conclusion: CD3Z hypermethylation is an SLE risk factor that can be modified by environmental factors and is associated with more severe SLE clinical manifestations, which are related to deranged T cell function by downregulating the CD3ζ-chain.

Indexed as

AdultCase-Control StudiesCD3 ComplexDNA MethylationDown-RegulationEpigenesis, GeneticFemaleHumansLupus Erythematosus, SystemicMaleMiddle AgedOdds RatioRepublic of KoreaT-LymphocytesUnited StatesVon Hippel-Lindau Tumor Suppressor ProteinCD3 antigen, zeta chainCD3 ComplexVHL protein, humanVon Hippel-Lindau Tumor Suppressor ProteinCD3Z hypermethylationenvironmental factorsystemic lupus erythematosus

Identifiers

PMID27940592
PMCPMC5850282
OpenAlexW2559949085

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.