Evidence map›Paper›PMID 27940542›Full record

ArticleApplied and environmental microbiology2017

Arsenic Detoxification by Geobacter Species.

Yan Dang, David J F Walker, Kaitlin E Vautour, Steven Dixon, Dawn E Holmes

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. The role ofSustainable microbiology · 2026
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  4. Development of a whole-cell biosensor based on an ArsR-PEnvironmental science and ecotechnology · 2021
    Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Yan DangDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.ORCID http://orcid.org/0000-0002-0126-7503
David J F WalkerDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Kaitlin E VautourDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Steven DixonDepartment of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts, USA.
Dawn E HolmesDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA dholmes@wne.edu.
University of Massachusetts Amherst · USWestern New England University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Insight into the mechanisms for arsenic detoxification by Geobacter species is expected to improve the understanding of global cycling of arsenic in iron-rich subsurface sedimentary environments. Analysis of 14 different Geobacter genomes showed that all of these species have genes coding for an arsenic detoxification system (ars operon), and several have genes required for arsenic respiration (arr operon) and methylation (arsM). Genes encoding four arsenic repressor-like proteins were detected in the genome of G. sulfurreducens; however, only one (ArsR1) regulated transcription of the ars operon. Elimination of arsR1 from the G. sulfurreducens chromosome resulted in enhanced transcription of genes coding for the arsenic efflux pump (Acr3) and arsenate reductase (ArsC). When the gene coding for Acr3 was deleted, cells were not able to grow in the presence of either the oxidized or reduced form of arsenic, while arsC deletion mutants could grow in the presence of arsenite but not arsenate. These studies shed light on how Geobacter influences arsenic mobility in anoxic sediments and may help us develop methods to remediate arsenic contamination in the subsurface. IMPORTANCE: This study examines arsenic transformation mechanisms utilized by Geobacter, a genus of iron-reducing bacteria that are predominant in many anoxic iron-rich subsurface environments. Geobacter species play a major role in microbially mediated arsenic release from metal hydroxides in the subsurface. This release raises arsenic concentrations in drinking water to levels that are high enough to cause major health problems. Therefore, information obtained from studies of Geobacter should shed light on arsenic cycling in iron-rich subsurface sedimentary environments, which may help reduce arsenic-associated illnesses. These studies should also help in the development of biosensors that can be used to detect arsenic contaminants in anoxic subsurface environments. We examined 14 different Geobacter genomes and found that all of these species possess genes coding for an arsenic detoxification system (ars operon), and some also have genes required for arsenic respiration (arr operon) and arsenic methylation (arsM).

Indexed as

Biodegradation, EnvironmentalArsenate ReductasesArsenicCarrier ProteinsGene Expression Regulation, BacterialGenome, BacterialGeobacterGeologic SedimentsInactivation, MetabolicIronArsenate ReductasesArsenicCarrier ProteinsIronarsenicars operondetoxificationgeneticsGeobacteriron reductiontranscriptomics

Identifiers

PMID27940542
PMCPMC5288829
OpenAlexW2560693008

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.