Evidence map›Paper›PMID 27939217›Full record

ArticleCell stem cell2017

PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs.

Zhexin Zhu, Chunliang Li, Yanwu Zeng, Jianyi Ding, Zepeng Qu, Junjie Gu, Laixiang Ge, Fan Tang, Xin Huang, Chenlin Zhou and 3 more

Erratum issuedOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Cell stem cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Histone Chaperones as Cardinal Players in Development.Frontiers in cell and developmental biology · 2022
    Review
  10. Article
  11. Article
  12. Cell Fate Decisions in the Wake of Histone H3 Deposition.Frontiers in cell and developmental biology · 2021
    Review
  13. Article
  14. Prohibitin S-Nitrosylation Is Required for the Neuroprotective Effect of Nitric Oxide in Neuronal Cultures.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Article
  15. Article
  16. Article
  17. Review
  18. Chaperones and Beyond as Key Players in Pluripotency Maintenance.Frontiers in cell and developmental biology · 2019
    Review
  19. Article
  20. Potential Root Foraging Strategy of Wheat (Frontiers in plant science · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Zhexin ZhuKey Laboratory of Stem Cell Biology, CAS Center for Excellence in Molecular Cell Science, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences/Shanghai JiaoTong University School of Medicine, 320 Yueyang Road, Shanghai 200032, China; University of Chinese Academy of Sciences, 19A Yuquan Rd, Shijingshan Distinct 100049, PRC.
Chunliang LiKey Laboratory of Stem Cell Biology, CAS Center for Excellence in Molecular Cell Science, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences/Shanghai JiaoTong University School of Medicine, 320 Yueyang Road, Shanghai 200032, China.
Yanwu ZengDepartment of Molecular Developmental Biology, Institute of Medical Sciences, Shanghai JiaoTong University School of Medicine, 225 South Chongqing Road, Shanghai 200025, China.
Jianyi DingKey Laboratory of Stem Cell Biology, CAS Center for Excellence in Molecular Cell Science, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences/Shanghai JiaoTong University School of Medicine, 320 Yueyang Road, Shanghai 200032, China; University of Chinese Academy of Sciences, 19A Yuquan Rd, Shijingshan Distinct 100049, PRC.
Zepeng QuDepartment of Molecular Developmental Biology, Institute of Medical Sciences, Shanghai JiaoTong University School of Medicine, 225 South Chongqing Road, Shanghai 200025, China.
Junjie GuDepartment of Molecular Developmental Biology, Institute of Medical Sciences, Shanghai JiaoTong University School of Medicine, 225 South Chongqing Road, Shanghai 200025, China.
Laixiang GeDepartment of Molecular Developmental Biology, Institute of Medical Sciences, Shanghai JiaoTong University School of Medicine, 225 South Chongqing Road, Shanghai 200025, China.
Fan TangDepartment of Molecular Developmental Biology, Institute of Medical Sciences, Shanghai JiaoTong University School of Medicine, 225 South Chongqing Road, Shanghai 200025, China.
Xin HuangKey Laboratory of Stem Cell Biology, CAS Center for Excellence in Molecular Cell Science, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences/Shanghai JiaoTong University School of Medicine, 320 Yueyang Road, Shanghai 200032, China; University of Chinese Academy of Sciences, 19A Yuquan Rd, Shijingshan Distinct 100049, PRC.
Chenlin ZhouKey Laboratory of Stem Cell Biology, CAS Center for Excellence in Molecular Cell Science, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences/Shanghai JiaoTong University School of Medicine, 320 Yueyang Road, Shanghai 200032, China.
Ping WangDepartment of Neurology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Deyou ZhengDepartment of Neurology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Ying JinKey Laboratory of Stem Cell Biology, CAS Center for Excellence in Molecular Cell Science, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences/Shanghai JiaoTong University School of Medicine, 320 Yueyang Road, Shanghai 200032, China; Department of Molecular Developmental Biology, Institute of Medical Sciences, Shanghai JiaoTong University School of Medicine, 225 South Chongqing Road, Shanghai 200025, China. Electronic address: yjin@sibs.ac.cn.
Shanghai Jiao Tong University · CNUniversity of Chinese Academy of Sciences · CNAlbert Einstein College of Medicine · USCenter for Excellence in Molecular Cell Science · CNShanghai Institutes for Biological Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The chromatin landscape and cellular metabolism both contribute to cell fate determination, but their interplay remains poorly understood. Using genome-wide siRNA screening, we have identified prohibitin (PHB) as an essential factor in self-renewal of human embryonic stem cells (hESCs). Mechanistically, PHB forms protein complexes with HIRA, a histone H3.3 chaperone, and stabilizes the protein levels of HIRA complex components. Like PHB, HIRA is required for hESC self-renewal. PHB and HIRA act together to control global deposition of histone H3.3 and gene expression in hESCs. Of particular note, PHB and HIRA regulate the chromatin architecture at the promoters of isocitrate dehydrogenase genes to promote transcription and, thus, production of α-ketoglutarate, a key metabolite in the regulation of ESC fate. Our study shows that PHB has an unexpected nuclear role in hESCs that is required for self-renewal and that it acts with HIRA in chromatin organization to link epigenetic organization to a metabolic circuit.

Indexed as

Epigenesis, GeneticCell Cycle ProteinsCell Self RenewalChromatinChromatin ImmunoprecipitationGenes, DevelopmentalGenome, HumanHEK293 CellsHistone ChaperonesHistonesHuman Embryonic Stem CellsHumansIsocitrate DehydrogenaseKetoglutaric AcidsMalePluripotent Stem CellsCell Cycle ProteinsChromatinHIRA protein, humanHistone ChaperonesHistonesIsocitrate DehydrogenaseKetoglutaric AcidsPHB protein, humanProhibitinsRepressor ProteinsRNA, Small InterferingTranscription FactorsepigeneticsH3.3HIRA complexeshuman ESCsmetabolismPHBself-renewalα-ketoglutarate

Identifiers

PMID27939217
OpenAlexW2560487446

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.