Evidence map›Paper›PMID 27936264›Full record

ArticleInvestigative ophthalmology & visual science2016

4D Graph-Based Segmentation for Reproducible and Sensitive Choroid Quantification From Longitudinal OCT Scans.

Ipek Oguz, Michael D Abramoff, Li Zhang, Kyungmoo Lee, Ellen Ziyi Zhang, Milan Sonka

Abstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ipek OguzDepartment of Ophthalmology and Visual Sciences, The University of Iowa, Iowa City, Iowa, United States 2Iowa Institute for Biomedical Imaging, The University of Iowa, Iowa City, Iowa, United States 3Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania, United States.
Michael D AbramoffDepartment of Ophthalmology and Visual Sciences, The University of Iowa, Iowa City, Iowa, United States 2Iowa Institute for Biomedical Imaging, The University of Iowa, Iowa City, Iowa, United States 4Veterans Affairs Medical Center, Iowa City, Iowa, United States.
Li ZhangIowa Institute for Biomedical Imaging, The University of Iowa, Iowa City, Iowa, United States.
Kyungmoo LeeIowa Institute for Biomedical Imaging, The University of Iowa, Iowa City, Iowa, United States.
Ellen Ziyi ZhangWellman Center for Photomedicine, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, United States.
Milan SonkaDepartment of Ophthalmology and Visual Sciences, The University of Iowa, Iowa City, Iowa, United States 2Iowa Institute for Biomedical Imaging, The University of Iowa, Iowa City, Iowa, United States.

Funding

TRD3: Percutaneous and Interstitial ImagingP41EB015903 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI Brett E Bouma · 2012 to 2026
$22.4M
Graph-Based Medical Image Segmentation in 3D and 4DR01EB004640 · NIBIB · UNIVERSITY OF IOWA · PI BUATTI, JOHN M, SONKA, MILAN · 2006 to 2022
$6.1M
Retinal Therapy Guided by 3-D OCT Image AnalysisR01EY019112 · NEI · UNIVERSITY OF IOWA · PI ABRAMOFF, MICHAEL DAVID, SONKA, MILAN · 2010 to 2014
$2.6M
Three-dimensional structure-function relationships in glaucoma from SD-OCTR01EY018853 · NEI · UNIVERSITY OF IOWA · PI ABRAMOFF, MICHAEL DAVID, KWON, YOUNG H. · 2009 to 2016
$2.6M
Development of a preclinical optical frequency domain angiography instrumentR01CA163528 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI VAKOC, BENJAMIN JAMES · 2012 to 2016
$1.9M
Early detection of Huntington's Disease: Longitudinal analysis of basal ganglia and cortical thicknessR01NS094456 · NINDS · VANDERBILT UNIVERSITY · PI OGUZ, IPEK · 2016 to 2019
$1.3M
NCI NIH HHS R01 CA163528NEI NIH HHS R01 EY018853NEI NIH HHS R01 EY019112NIBIB NIH HHS P41 EB015903NIBIB NIH HHS R01 EB004640NINDS NIH HHS R01 NS094456
6 · The paper itself

Abstract

Purpose: Longitudinal imaging is becoming more commonplace for studies of disease progression, response to treatment, and healthy maturation. Accurate and reproducible quantification methods are desirable to fully mine the wealth of data in such datasets. However, most current retinal OCT segmentation methods are cross-sectional and fail to leverage the inherent context present in longitudinal sequences of images. Methods: We propose a novel graph-based method for segmentation of multiple three-dimensional (3D) scans over time (termed 3D + time or 4D). The usefulness of this approach in retinal imaging is illustrated in the segmentation of the choroidal surfaces from longitudinal optical coherence tomography (OCT) scans. A total of 3219 synthetic (3070) and patient (149) OCT images were segmented for validation of our approach. Results: The results show that the proposed 4D segmentation method is significantly more reproducible (P < 0.001) than the 3D approach and is significantly more sensitive to temporal changes (P < 0.0001) achieved by the substantial increase of measurement robustness. Conclusions: This is the first automated 4D method for jointly quantifying choroidal thickness in longitudinal OCT studies. Our method is robust to image noise and produces more reproducible choroidal thickness measurements than a sequence of independent 3D segmentations, without sacrificing sensitivity to temporal changes.

Indexed as

AgedChoroidChoroidal NeovascularizationFemaleHumansImage Processing, Computer-AssistedMaleReproducibility of ResultsROC CurveTomography, Optical Coherence

Identifiers

PMID27936264
PMCPMC5215413

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.