Evidence map›Paper›PMID 27936065›Full record

ArticlePloS one2016

Kinase Screening in Pichia pastoris Identified Promising Targets Involved in Cell Growth and Alcohol Oxidase 1 Promoter (PAOX1) Regulation.

Wei Shen, Chuixing Kong, Ying Xue, Yiqi Liu, Menghao Cai, Yuanxing Zhang, Tianyi Jiang, Xiangshan Zhou, Mian Zhou

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  3. Comparison of CRISPR-MAD7 and CRISPR-Cas9 for Gene Disruptions inJournal of fungi (Basel, Switzerland) · 2024
    Article
  4. Advances in Metabolic Engineering ofJournal of fungi (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Review
  7. Article
  8. Engineering of Promoters for Gene Expression in Pichia pastoris.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Transcriptomic Analysis ofFrontiers in microbiology · 2020
    Article
  14. Modulation of acetate utilization inBiotechnology for biofuels · 2019
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Wei ShenState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Chuixing KongState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Ying XueState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Yiqi LiuState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Menghao CaiState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Yuanxing ZhangState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Tianyi JiangRoche R&D Center (China) Ltd, Pudong, Shanghai, China.
Xiangshan ZhouState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Mian ZhouState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.ORCID http://orcid.org/0000-0003-4226-6299
East China University of Science and Technology · CNRoche (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As one of the most commonly used eukaryotic recombinant protein expression systems, P. pastoris relies heavily on the AOX1 promoter (PAOX1), which is strongly induced by methanol but strictly repressed by glycerol and glucose. However, the complicated signaling pathways involved in PAOX1 regulation when supplemented with different carbon sources are poorly understood. Here we constructed a kinase deletion library in P. pastoris and identified 27 mutants which showed peculiar phenotypes in cell growth or PAOX1 regulation. We analyzed both annotations and possible functions of these 27 targets, and then focused on the MAP kinase Hog1. In order to locate its potential downstream components, we performed the phosphoproteome analysis on glycerol cultured WT and Δhog1 strains and identified 157 differentially phosphorylated proteins. Our results identified important kinases involved in P. pastoris cell growth and PAOX1 regulation, which could serve as valuable targets for further mechanistic studies.

Indexed as

Gene Expression Regulation, FungalPromoter Regions, GeneticAlcohol OxidoreductasesFungal ProteinsGene DeletionPichiaProtein Kinasesalcohol oxidaseAlcohol OxidoreductasesFungal ProteinsProtein Kinases

Identifiers

PMID27936065
PMCPMC5147967
OpenAlexW2560721383

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.