Evidence map›Paper›PMID 27935943›Full record

ArticlePloS one2016

Confined Mobility of TonB and FepA in Escherichia coli Membranes.

Yoriko Lill, Lorne D Jordan, Chuck R Smallwood, Salete M Newton, Markus A Lill, Phillip E Klebba, Ken Ritchie

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yoriko LillDepartment of Physics, Purdue University, West Lafayette, Indiana, United States of America.
Lorne D JordanDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas, United States of America.
Chuck R SmallwoodDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma, United States of America.
Salete M NewtonDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas, United States of America.
Markus A LillDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana, United States of America.
Phillip E KlebbaDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas, United States of America.
Ken RitchieDepartment of Physics, Purdue University, West Lafayette, Indiana, United States of America.
Kansas State University · USPurdue University West Lafayette · USUniversity of Oklahoma · US

Funding

LOOP DELETION MUTAGENESIS OF FEPAR01GM053836 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI KLEBBA, PHILLIP E · 1995 to 2009
$2.4M
High-throughput fluorescence screening for inhibitors of TonB-dependent iron transportR21AI115187 · NIAID · KANSAS STATE UNIVERSITY · PI KLEBBA, PHILLIP E · 2015 to 2016
$388k
NIAID NIH HHS R21 AI115187NIGMS NIH HHS R01 GM053836
6 · The paper itself

Abstract

The important process of nutrient uptake in Escherichia coli, in many cases, involves transit of the nutrient through a class of beta-barrel proteins in the outer membrane known as TonB-dependent transporters (TBDTs) and requires interaction with the inner membrane protein TonB. Here we have imaged the mobility of the ferric enterobactin transporter FepA and TonB by tracking them in the membranes of live E. coli with single-molecule resolution at time-scales ranging from milliseconds to seconds. We employed simple simulations to model/analyze the lateral diffusion in the membranes of E.coli, to take into account both the highly curved geometry of the cell and artifactual effects expected due to finite exposure time imaging. We find that both molecules perform confined lateral diffusion in their respective membranes in the absence of ligand with FepA confined to a region [Formula: see text] μm in radius in the outer membrane and TonB confined to a region [Formula: see text] μm in radius in the inner membrane. The diffusion coefficient of these molecules on millisecond time-scales was estimated to be [Formula: see text] μm2/s and [Formula: see text] μm2/s for FepA and TonB, respectively, implying that each molecule is free to diffuse within its domain. Disruption of the inner membrane potential, deletion of ExbB/D from the inner membrane, presence of ligand or antibody to FepA and disruption of the MreB cytoskeleton was all found to further restrict the mobility of both molecules. Results are analyzed in terms of changes in confinement size and interactions between the two proteins.

Indexed as

Gene Expression Regulation, BacterialAntibodies, NeutralizingBacterial Outer Membrane ProteinsCarrier ProteinsCell MembraneCytoskeletonDiffusionEscherichia coliEscherichia coli ProteinsGene DeletionMembrane ProteinsMolecular Dynamics SimulationProtein BindingProtein TransportReceptors, Cell SurfaceSingle Molecule ImagingAntibodies, NeutralizingBacterial Outer Membrane ProteinsCarrier Proteinsenterobactin receptorEscherichia coli ProteinsExbB protein, E coliexbD protein, E coliMembrane ProteinsMreB protein, E coliReceptors, Cell SurfacetonB protein, E coli

Identifiers

PMID27935943
PMCPMC5147803
OpenAlexW2560405511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.