Evidence map›Paper›PMID 27935870›Full record

ArticleOncotarget2017

Changes in the methylation status of the Oct3/4, Nanog, and Sox2 promoters in stem cells during regeneration of rat tracheal epithelium after injury.

Ying Zhou, Nan Song, Xin Li, Ying Han, Zihan Ren, Jing-Xian Xu, Yu-Chen Han, Fang Li, Xinshan Jia

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ying ZhouDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
Nan SongDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
Xin LiDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
Ying HanDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
Zihan RenDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
Jing-Xian XuDepartment of Ophthalmology, The 4th Affiliated Hospital, Eye Institute, China Medical University, The Key Laboratory of Lens Research, Shenyang 110005, China.
Yu-Chen HanDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
Fang LiDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
Xinshan JiaDepartment of Pathology, College of Basic Medical Sciences, China Medical University, Shenyang, 110001, China.
China Medical University · CNShenyang Pharmaceutical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated the relationship between promoter methylation and tracheal stem cell activation. We developed a model of rat tracheal epithelium regeneration after 5-fluorouracil (5-FU)-induced injury. Using immunohistochemistry and Western blotting, the expression levels of the stem cell pluripotency regulator Oct3/4 and differentiation marker CK14 were measured after 5-FU treatment. The methylation status of the Oct3/4, Nanog, and Sox2 promoters was investigated using methylation-specific PCR. Additionally, the effects of 5-azacytidine (5-azaC), a demethylating agent, on Oct3/4, Nanog, and Sox2 mRNA and protein expression were evaluated. Finally, we measured the activity of the maintenance and de novo DNA methyltransferases DNMT1, DNMT3a, and DNMT3b. Our data indicate that Oct3/4, Sox2, and Nanog are transiently expressed in response to 5-FU-induced injury, and then they are gradually silenced as the cells differentiate. DNA methylation can result in silencing of gene expression, and it can determine whether tracheal stem cells are in an active or dormant state. Treatment with 5-FU reversed the methylation of the Oct3/4, Nanog, and Sox2 promoters, which corresponded to increases in Oct3/4, Nanog, and Sox2 mRNA and protein. Thus, both maintenance and de novo methyltransferases are involved in regulating tracheal stem cell dormancy and activation.

Indexed as

DNA MethylationPromoter Regions, GeneticAnimalsAzacitidineDisease Models, AnimalGene ExpressionImmunohistochemistryNanog Homeobox ProteinOctamer Transcription Factor-3RatsRegenerationRespiratory MucosaSOXB1 Transcription FactorsStem CellsTracheaWound HealingAzacitidineNanog Homeobox ProteinOctamer Transcription Factor-3SOXB1 Transcription FactorsmethylationOct3/4silent genestem celltracheal epithelium

Identifiers

PMID27935870
PMCPMC5356857
OpenAlexW2560473462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.