Evidence map›Paper›PMID 27934875›Full record

ArticleScientific reports2016

Functional and structural characterization of a novel putative cysteine protease cell wall-modifying multi-domain enzyme selected from a microbial metagenome.

Muhammad Faheem, Diogo Martins-de-Sa, Julia F D Vidal, Alice C M Álvares, José Brandão-Neto, Louise E Bird, Mark D Tully, Frank von Delft, Betulia M Souto, Betania F Quirino and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Plant Milk-Clotting Enzymes for Cheesemaking.Foods (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Muhammad FaheemLaboratório de Biofísica Molecular, Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, 70910-900, Brazil.
Diogo Martins-de-SaLaboratório de Biofísica Molecular, Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, 70910-900, Brazil.
Julia F D VidalLaboratório de Biofísica Molecular, Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, 70910-900, Brazil.
Alice C M ÁlvaresLaboratório de Biofísica Molecular, Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, 70910-900, Brazil.
José Brandão-NetoDiamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, OX11 0QX, England.
Louise E BirdOPPF-UK, Research Complex at Harwell, Rutherford Appleton Laboratory, Oxford, OX11 0FA, United Kingdom.
Mark D TullyDiamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, OX11 0QX, England.
Frank von DelftDiamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, OX11 0QX, England.
Betulia M SoutoEmbrapa Agroenergia, Parque Estação Biológica - PqEB s/n°, Brasília, DF, 70770-901, Brazil.
Betania F QuirinoPrograma de Pós Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, Brasília, DF, Brazil.
Sonia M FreitasLaboratório de Biofísica Molecular, Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, 70910-900, Brazil.
João Alexandre R G BarbosaLaboratório de Biofísica Molecular, Departamento de Biologia Celular, Universidade de Brasília, Brasília, DF, 70910-900, Brazil.

Funding

Medical Research Council MR/K018779/1
6 · The paper itself

Abstract

A current metagenomics focus is to interpret and transform collected genomic data into biological information. By combining structural, functional and genomic data we have assessed a novel bacterial protein selected from a carbohydrate-related activity screen in a microbial metagenomic library from Capra hircus (domestic goat) gut. This uncharacterized protein was predicted as a bacterial cell wall-modifying enzyme (CWME) and shown to contain four domains: an N-terminal, a cysteine protease, a peptidoglycan-binding and an SH3 bacterial domain. We successfully cloned, expressed and purified this putative cysteine protease (PCP), which presented autoproteolytic activity and inhibition by protease inhibitors. We observed cell wall hydrolytic activity and ampicillin binding capacity, a characteristic of most bacterial CWME. Fluorimetric binding analysis yielded a K

Indexed as

AmpicillinAnimalsBacteriaBacterial ProteinsCell WallCloning, MolecularCysteine ProteasesGoatsHydrolysisMetagenomeModels, MolecularProtein BindingProtein DomainsProtein StabilityProtein Structure, SecondaryScattering, Small AngleAmpicillinBacterial ProteinsCysteine Proteases

Identifiers

PMID27934875
PMCPMC5146660

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.