Evidence map›Paper›PMID 27934765›Full record

ArticleScience (New York, N.Y.)2016

Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease.

Benjamin M Akiyama, Hannah M Laurence, Aaron R Massey, David A Costantino, Xuping Xie, Yujiao Yang, Pei-Yong Shi, Jay C Nix, J David Beckham, Jeffrey S Kieft

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 187 papers.

0numbers the graph read from it
0cells of the map it votes in
187citing papers in PubMed
28.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

187 citing papers in PubMed, 260 citations in OpenAlex.

  1. Review
  2. Article
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  10. Viral RNAs as Dual Graphs: Extending the Motif Universe of RNAs.bioRxiv : the preprint server for biology · 2026
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Cellular Biology: Virus-Host Interactions and RNA Structure and Function.Current topics in microbiology and immunology · 2026
    Review
  17. Article
  18. Article
  19. Article
  20. Article

127 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Benjamin M AkiyamaDepartment of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA.
Hannah M LaurenceDepartment of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA.
Aaron R MasseyDepartment of Medicine, Division of Infectious Diseases, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA.
David A CostantinoDepartment of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA.
Xuping XieDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Yujiao YangDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Pei-Yong ShiDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Jay C NixMolecular Biology Consortium, Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
J David BeckhamDepartment of Medicine, Division of Infectious Diseases, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA.
Jeffrey S KieftDepartment of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA. jeffrey.kieft@ucdenver.edu.
University of Colorado Denver · USThe University of Texas Medical Branch at Galveston · USLawrence Berkeley National Laboratory · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Structure, function, and dynamics of viral RNAs and RNA-containing complexesR35GM118070 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Jeffrey S Kieft · 2016 to 2026
$10.6M
MECHANISM OF RNA SYNTHESIS BY DENGUE VIRUS NS5R01AI087856 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Kyung H Choi · 2011 to 2026
$5.5M
Structural basis of protein synthesis by the hepatitis C virus IRES RNAR01GM081346 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KIEFT, JEFFREY S · 2008 to 2016
$2.0M
Macromolecular X-ray Data Collection InstrumentationS10OD012033 · OD · UNIVERSITY OF COLORADO DENVER · PI CHURCHILL, MAIR E · 2014 to 2014
$421k
Understanding pathogenic noncoding RNA production in Zika Virus infectionR21AI129569 · NIAID · UNIVERSITY OF COLORADO DENVER · PI KIEFT, JEFFREY S · 2017 to 2018
$419k
Automated Macromolecular Crystallization SystemS10RR024632 · NCRR · UNIVERSITY OF COLORADO DENVER · PI KIEFT, JEFFREY S · 2007 to 2007
$340k
A pathogenic RNA that resists degradation: characterization of subgenomic flavivirus RNAF32GM117730 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI AKIYAMA, BENJAMIN · 2016 to 2017
$116k
NCI NIH HHS P30 CA046934NCRR NIH HHS S10 RR024632NIAID NIH HHS R01 AI087856NIAID NIH HHS R21 AI129569NIGMS NIH HHS F32 GM117730NIGMS NIH HHS R01 GM081346NIGMS NIH HHS R35 GM118070NIH HHS S10 OD012033
6 · The paper itself

Abstract

The outbreak of Zika virus (ZIKV) and associated fetal microcephaly mandates efforts to understand the molecular processes of infection. Related flaviviruses produce noncoding subgenomic flaviviral RNAs (sfRNAs) that are linked to pathogenicity in fetal mice. These viruses make sfRNAs by co-opting a cellular exonuclease via structured RNAs called xrRNAs. We found that ZIKV-infected monkey and human epithelial cells, mouse neurons, and mosquito cells produce sfRNAs. The RNA structure that is responsible for ZIKV sfRNA production forms a complex fold that is likely found in many pathogenic flaviviruses. Mutations that disrupt the structure affect exonuclease resistance in vitro and sfRNA formation during infection. The complete ZIKV xrRNA structure clarifies the mechanism of exonuclease resistance and identifies features that may modulate function in diverse flaviviruses.

Indexed as

AnimalsChlorocebus aethiopsCulicidaeEpithelial CellsExoribonucleasesHumansMiceMutationNeuronsNucleic Acid ConformationRNA, UntranslatedRNA, ViralVero CellsZika VirusZika Virus InfectionExoribonucleasesRNA, UntranslatedRNA, Viral

Identifiers

PMID27934765
PMCPMC5476369
OpenAlexW2550011929

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.