Evidence map›Paper›PMID 27934693›Full record

ArticleCold Spring Harbor protocols2016

Gene-Centered Yeast One-Hybrid Assays.

Juan I Fuxman Bass, John S Reece-Hoyes, Albertha J M Walhout

Abstract read
In one paragraph

Article in Cold Spring Harbor protocols, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Candidate promoter-associated factors ofFrontiers in plant science · 2026
    Article
  3. Review
  4. Review
  5. A large-scale cancer-specific protein-DNA interaction network.bioRxiv : the preprint server for biology · 2024
    Article
  6. Construction of Yeast One-Hybrid Library ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Protein Interactomics by Two-Hybrid Methods.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Juan I Fuxman BassProgram in Systems Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605.
John S Reece-HoyesProgram in Systems Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605.
Albertha J M WalhoutProgram in Systems Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605.
University of Massachusetts Chan Medical School · US

Funding

Transcription networks in C elegans organogenesisR01DK068429 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI A. J. Marian Walhout · 2005 to 2026
$10.9M
Identifying transcription factor binding sites in the C. elegans genomeR01GM082971 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WALHOUT, A. J. MARIAN · 2008 to 2016
$5.8M
Gene Regulatory Networks in Development and PhysiologyR56DK068429 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WALHOUT, A. J. MARIAN · 2018 to 2018
$671k
NIDDK NIH HHS R01 DK068429NIDDK NIH HHS R56 DK068429NIGMS NIH HHS R01 GM082971
6 · The paper itself

Abstract

An important question when studying gene regulation is which transcription factors (TFs) interact with which cis-regulatory elements, such as promoters and enhancers. Addressing this issue in complex multicellular organisms is challenging as several hundreds of TFs and thousands of regulatory elements must be considered in the context of different tissues and physiological conditions. Yeast one-hybrid (Y1H) assays provide a powerful "gene-centered" method to identify the TFs that can bind a DNA sequence of interest. In this introduction, we describe the basic principles of the Y1H assay and its advantages and disadvantages and briefly discuss how it is complementary to "TF-centered" methods that identify protein-DNA interactions for a known protein of interest.

Indexed as

Two-Hybrid System TechniquesDNA, FungalGene Expression Regulation, FungalProtein BindingSaccharomyces cerevisiaeTranscription FactorsDNA, FungalTranscription Factors

Identifiers

PMID27934693
PMCPMC5443116
OpenAlexW2558106936

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.