Evidence map›Paper›PMID 27933790›Full record

ArticleBiochemistry2016

Structural Analysis Provides Mechanistic Insight into Nicotine Oxidoreductase from Pseudomonas putida.

Margarita A Tararina, Kim D Janda, Karen N Allen

Abstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. An enzymatic advance in nicotine cessation therapy.Chemical communications (Cambridge, England) · 2018
    Article
  14. The enzymes of microbial nicotine metabolism.Beilstein journal of organic chemistry · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Margarita A TararinaProgram in Biomolecular Pharmacology, Boston University School of Medicine , 72 East Concord Street, Boston, Massachusetts 02118, United States.
Kim D JandaDepartments of Chemistry and Immunology, The Skaggs Institute for Chemical Biology, Worm Institute of Medical Research (WIRM), The Scripps Research Institute , 10550 North Torrey Pines Road, BCC-582, La Jolla, California 92037, United States.
Karen N AllenProgram in Biomolecular Pharmacology, Boston University School of Medicine , 72 East Concord Street, Boston, Massachusetts 02118, United States.
Boston University · USScripps Research Institute · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
TRAINING IN BIOMOLECULAR PHARMACOLOGYT32GM008541 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARB, DAVID H · 1997 to 2022
$5.2M
Enzympharmacotherapy for attenuating nicotine's psychoactive effectsR21DA041839 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI JANDA, KIM · 2016 to 2017
$481k
NIDA NIH HHS R21 DA041839NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41 GM103403NIGMS NIH HHS T32 GM008541
6 · The paper itself

Abstract

The first structure of nicotine oxidoreductase (NicA2) was determined by X-ray crystallography. Pseudomonas putida has evolved nicotine-degrading activity to provide a source of carbon and nitrogen. The structure establishes NicA2 as a member of the monoamine oxidase family. Residues 1-50 are disordered and may play a role in localization. The nicotine-binding site proximal to the isoalloxazine ring of flavin shows an unusual composition of the classical aromatic cage (W427 and N462). The active site architecture is consistent with the proposed binding of the deprotonated form of the substrate and the flavin-dependent oxidation of the pyrrolidone C-N bond followed by nonenzymatic hydrolysis.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCatalytic DomainCrystallography, X-RayDinitrocresolsFlavinsModels, ChemicalModels, MolecularMolecular StructureMonoamine OxidaseNicotineOxidation-ReductionOxidoreductasesProtein DomainsProtein Structure, Secondary4,6-dinitro-o-cresolBacterial ProteinsDinitrocresolsFlavinsisoalloxazineMonoamine OxidaseNicotineOxidoreductases

Identifiers

PMID27933790
PMCPMC6250430
OpenAlexW2550103919

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.