Evidence map›Paper›PMID 27932907›Full record

ArticleBiodiversity data journal2016

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab).

Constantinos Varsos, Theodore Patkos, Anastasis Oulas, Christina Pavloudi, Alexandros Gougousis, Umer Zeeshan Ijaz, Irene Filiopoulou, Nikolaos Pattakos, Edward Vanden Berghe, Antonio Fernández-Guerra and 6 more

Abstract read
In one paragraph

Article in Biodiversity data journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Constantinos VarsosInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.
Theodore PatkosInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.
Anastasis OulasInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
Christina PavloudiInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece; Department of Biology, University of Ghent, Ghent, Belgium, Department of Microbial Ecophysiology, University of Bremen, Bremen, Germany.
Alexandros GougousisInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
Umer Zeeshan IjazUniversity of Glasgow, Glasgow, United Kingdom.
Irene FiliopoulouInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
Nikolaos PattakosInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
Edward Vanden BergheVrije Universiteit Brussels, 1050, Brussels, Belgium.
Antonio Fernández-GuerraUniversity of Oxford, Oxford e-Research Centre, Oxford, United Kingdom.
Sarah FaulwetterInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
Eva ChatzinikolaouInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
Evangelos PafilisInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
Chryssoula BekiariInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.
Martin DoerrInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.
Christos ArvanitidisInstitute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundParallel data manipulation using R has previously been addressed by members of the R community, however most of these studies produce NEW INFORMATION: In this paper, the novelty stems from implementations of parallel methodologies which rely on the processing of data on different levels of abstraction and the availability of these processes through an integrated portal. Parallel implementation R packages, such as the

Indexed as

biodiversity analysesecological analysesParallel data manipulationpbdMPI packageRSingle Program Multiple Data (SPMD) parallelizationvegan packagevirtual enviroment

Identifiers

PMID27932907
PMCPMC5136650

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.