Evidence map›Paper›PMID 27932614›Full record

ArticleThe Journal of infectious diseases2017

Validation of the Cepheid GeneXpert for Detecting Ebola Virus in Semen.

Amy James Loftis, Saturday Quellie, Kelly Chason, Emmanuel Sumo, Mason Toukolon, Yonnie Otieno, Heinzfried Ellerbrok, Marcia M Hobbs, David Hoover, Karine Dube and 2 more

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in The Journal of infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Long-term Complications of Ebola Virus Disease: Prevalence and Predictors of Major Symptoms and the Role of Inflammation.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Article
  6. Article
  7. Article
  8. The current landscape of nucleic acid tests for filovirus detection.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2018
    Review
  9. Status, quality and specific needs of Ebola virus diagnostic capacity and capability in laboratories of the two European preparedness laboratory networks EMERGE and EVD-LabNet.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2018
    Article
  10. Article
  11. Screening of genital fluid for Ebola virus.The Lancet. Global health · 2017
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Amy James LoftisDivision of Infectious Diseases, University of North Carolina, Chapel Hill.
Saturday QuelliePhebe Hospital PCR Laboratory, Suokoko, Bong County, Liberia.
Kelly ChasonDivision of Pulmonary and Critical Care Medicine, University of North Carolina, Chapel Hill.
Emmanuel SumoPhebe Hospital PCR Laboratory, Suokoko, Bong County, Liberia.
Mason ToukolonPhebe Hospital PCR Laboratory, Suokoko, Bong County, Liberia.
Yonnie OtienoClinical Research Management, Africa, Hinckley, Ohio.
Heinzfried EllerbrokRobert Koch Institute, Berlin, Germany.
Marcia M HobbsDivision of Infectious Diseases, University of North Carolina, Chapel Hill.
David HooverClinical Research Management, Africa, Hinckley, Ohio.
Karine DubeClinical Research Management, Africa, Hinckley, Ohio.
David A WohlDivision of Infectious Diseases, University of North Carolina, Chapel Hill.
William A FischerDivision of Pulmonary and Critical Care Medicine, University of North Carolina, Chapel Hill.
University of North Carolina at Chapel Hill · USClinical Research Management · USLiberian Institute for Biomedical Research · LRRobert Koch Institute · DE

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Clinical Sequelae and Urogenital Viral Dynamics in Survivors of Ebola Virus DiseaseR01AI123535 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FISCHER, WILLIAM, WOHL, DAVID A · 2017 to 2021
$3.3M
Mentoring New Investigators in Criminal Justice HIV Prevention and TreatmentK24DA037101 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WOHL, DAVID A · 2014 to 2018
$911k
Clinical Sequelae and Urogenital Viral Dynamics in Survivors of Ebola Virus DiseaseK23AI121516 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FISCHER, WILLIAM · 2016 to 2019
$783k
The Effect of Aging on LAIV Replication in Human Nasal Epithelial CellsR03AG045088 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FISCHER, WILLIAM · 2013 to 2014
$152k
NIAID NIH HHS K23 AI121516NIAID NIH HHS P30 AI050410NIAID NIH HHS R01 AI123535NIA NIH HHS R03 AG045088NIDA NIH HHS K24 DA037101
6 · The paper itself

Abstract

backgroundEbola virus (EBOV) RNA persistence in semen, reported sexual transmission, and sporadic clusters at the end of the 2013-2016 epidemic have prompted recommendations that male survivors refrain from unprotected sex unless their semen is confirmed to be EBOV free. However, there is no fully validated assay for EBOV detection in fluids other than blood.

methodsThe Cepheid Xpert Ebola assay for EBOV RNA detection was validated for whole semen and blood using samples obtained from uninfected donors and spiked with inactivated EBOV. The validation procedure incorporated standards from Clinical and Laboratory Standards Institute and Good Clinical Laboratory Practices guidelines for evaluating molecular devices for use in infectious disease testing.

resultsThe assay produced limits of detection of 1000 copies/mL in semen and 275 copies/mL in blood. Limits of detection for both semen and blood increased with longer intervals between collection and testing, with acceptable results obtained up to 72 hours after specimen collection.

conclusionsThe Cepheid Xpert Ebola assay is accurate and precise for detecting EBOV in whole semen. A validated assay for EBOV RNA detection in semen informs the care of male survivors of Ebola, as well as recommendations for public health.

Indexed as

Containment of BiohazardsEbolavirusHemorrhagic Fever, EbolaHumansMalePolymerase Chain ReactionReproducibility of ResultsRNA, ViralSemenRNA, ViralCepheid Xpert.EbolaSemenValidation

Identifiers

PMID27932614
PMCPMC5965086
OpenAlexW2560248458

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.