Evidence map›Paper›PMID 27932527›Full record

ArticleMolecular & cellular proteomics : MCP2017

Mechanisms of In Vivo Ribosome Maintenance Change in Response to Nutrient Signals.

Andrew D Mathis, Bradley C Naylor, Richard H Carson, Eric Evans, Justin Harwell, Jared Knecht, Eric Hexem, Fredrick F Peelor, Benjamin F Miller, Karyn L Hamilton and 3 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Impacts of ribosomal RNA sequence variation on gene expression and phenotype.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Ribosome Assembly and Repair.Annual review of cell and developmental biology · 2024
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. RNA in axons, dendrites, synapses and beyond.Frontiers in molecular neuroscience · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Andrew D MathisFrom the ‡Department of Chemistry and Biochemistry.
Bradley C NaylorFrom the ‡Department of Chemistry and Biochemistry.
Richard H CarsonFrom the ‡Department of Chemistry and Biochemistry.
Eric EvansFrom the ‡Department of Chemistry and Biochemistry.
Justin HarwellFrom the ‡Department of Chemistry and Biochemistry.
Jared KnechtFrom the ‡Department of Chemistry and Biochemistry.
Eric HexemFrom the ‡Department of Chemistry and Biochemistry.
Fredrick F Peelor§Department of Health and Exercise Science, Colorado State University, Fort Collins, Colorado 80523.
Benjamin F Miller§Department of Health and Exercise Science, Colorado State University, Fort Collins, Colorado 80523.
Karyn L Hamilton§Department of Health and Exercise Science, Colorado State University, Fort Collins, Colorado 80523.
Mark K Transtrum¶Department of Physics and Astronomy.
Benjamin T Bikman‖Department of Physiology and Developmental Biology, Brigham Young University, Provo, Utah 84602.
John C PriceFrom the ‡Department of Chemistry and Biochemistry, jcprice@chem.byu.edu.
Colorado State University · USAstronomy and Space · AUBrigham Young University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Control of protein homeostasis is fundamental to the health and longevity of all organisms. Because the rate of protein synthesis by ribosomes is a central control point in this process, regulation, and maintenance of ribosome function could have amplified importance in the overall regulatory circuit. Indeed, ribosomal defects are commonly associated with loss of protein homeostasis, aging, and disease (1-4), whereas improved protein homeostasis, implying optimal ribosomal function, is associated with disease resistance and increased lifespan (5-7). To maintain a high-quality ribosome population within the cell, dysfunctional ribosomes are targeted for autophagic degradation. It is not known if complete degradation is the only mechanism for eukaryotic ribosome maintenance or if they might also be repaired by replacement of defective components. We used stable-isotope feeding and protein mass spectrometry to measure the kinetics of turnover of ribosomal RNA (rRNA) and 71 ribosomal proteins (r-proteins) in mice. The results indicate that exchange of individual proteins and whole ribosome degradation both contribute to ribosome maintenance in vivo In general, peripheral r-proteins and those with more direct roles in peptide-bond formation are replaced multiple times during the lifespan of the assembled structure, presumably by exchange with a free cytoplasmic pool, whereas the majority of r-proteins are stably incorporated for the lifetime of the ribosome. Dietary signals impact the rates of both new ribosome assembly and component exchange. Signal-specific modulation of ribosomal repair and degradation could provide a mechanistic link in the frequently observed associations among diminished rates of protein synthesis, increased autophagy, and greater longevity (5, 6, 8, 9).

Indexed as

AnimalsAutophagyDietIsotope LabelingMass SpectrometryMiceRibosomal ProteinsRibosomesRNA, RibosomalRibosomal ProteinsRNA, Ribosomal

Identifiers

PMID27932527
PMCPMC5294211
OpenAlexW2560112395

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.