Evidence map›Paper›PMID 27932498›Full record

ArticleMolecular biology of the cell2017

Harnessing molecular motors for nanoscale pulldown in live cells.

Jonathan E Bird, Melanie Barzik, Meghan C Drummond, Daniel C Sutton, Spencer M Goodman, Eva L Morozko, Stacey M Cole, Alexandra K Boukhvalova, Jennifer Skidmore, Diana Syam and 7 more

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

  1. FAM92A Underlies Nonsyndromic Postaxial Polydactyly in Humans and an Abnormal Limb and Digit Skeletal Phenotype in Mice.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2019
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  13. CaMolecular biology of the cell · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Jonathan E BirdLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814 jonathan.bird@nih.gov.
Melanie BarzikLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Meghan C DrummondLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Daniel C SuttonLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Spencer M GoodmanLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Eva L MorozkoLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Stacey M ColeLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Alexandra K BoukhvalovaLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Jennifer SkidmoreDepartment of Pediatrics, University of Michigan, Ann Arbor, MI 48109.
Diana SyamDepartment of Pediatrics, University of Michigan, Ann Arbor, MI 48109.
Elizabeth A WilsonLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Tracy FitzgeraldMouse Auditory Testing Core Facility, National Institute on Deafness and Other Communication Disorders, National Institutes of Health, Bethesda, MD 20814.
Atteeq U RehmanLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Donna M MartinDepartment of Pediatrics, University of Michigan, Ann Arbor, MI 48109.
Erich T BogerLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Inna A BelyantsevaLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
Thomas B FriedmanLaboratory of Molecular Genetics, National Institutes of Health, Bethesda, MD 20814.
National Institutes of Health · USUniversity of Michigan · US

Funding

Identification of Genes Causing Syndromic And Nonsyndromic Hearing ImpairmentZIADC000039 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FRIEDMAN, THOMAS · 2009 to 2025
$48.7M
Myosin XVA and Other Genes Essential for Stereocilia MorphogenesisZIADC000048 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FRIEDMAN, THOMAS · 2009 to 2025
$23.6M
Mouse Auditory Testing Core FacilityZICDC000080 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FITZGERALD, TRACY · 2012 to 2025
$8.0M
Identification of Genes Causing Syndromic And Nonsyndromic Hearing ImpairmentZ01DC000039 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI FRIEDMAN, THOMAS BAER · 1997 to 2008
$7.2M
Developmental Mechanisms of the Chromodomain Gene Chd7R01DC009410 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, DONNA M. · 2009 to 2018
$3.7M
SPEECH AND HEARING SCIENCEST32DC000039 · NIDCD · CUNY GRADUATE SCH AND UNIV CTR · PI SCHWARTZ, RICHARD G · 1992 to 2002
$429k
Intramural NIH HHS Z01 DC000039NIDCD NIH HHS R01 DC009410NIDCD NIH HHS T32 DC000039
6 · The paper itself

Abstract

Protein-protein interactions (PPIs) regulate assembly of macromolecular complexes, yet remain challenging to study within the native cytoplasm where they normally exert their biological effect. Here we miniaturize the concept of affinity pulldown, a gold-standard in vitro PPI interrogation technique, to perform nanoscale pulldowns (NanoSPDs) within living cells. NanoSPD hijacks the normal process of intracellular trafficking by myosin motors to forcibly pull fluorescently tagged protein complexes along filopodial actin filaments. Using dual-color total internal reflection fluorescence microscopy, we demonstrate complex formation by showing that bait and prey molecules are simultaneously trafficked and actively concentrated into a nanoscopic volume at the tips of filopodia. The resulting molecular traffic jams at filopodial tips amplify fluorescence intensities and allow PPIs to be interrogated using standard epifluorescence microscopy. A rigorous quantification framework and software tool are provided to statistically evaluate NanoSPD data sets. We demonstrate the capabilities of NanoSPD for a range of nuclear and cytoplasmic PPIs implicated in human deafness, in addition to dissecting these interactions using domain mapping and mutagenesis experiments. The NanoSPD methodology is extensible for use with other fluorescent molecules, in addition to proteins, and the platform can be easily scaled for high-throughput applications.

Indexed as

Actin CytoskeletonCell MovementGreen Fluorescent ProteinsMicroscopy, FluorescenceMolecular ImagingMolecular Motor ProteinsMyosinsProtein Interaction Domains and MotifsProtein TransportPseudopodiaSingle-Cell AnalysisGreen Fluorescent ProteinsMolecular Motor ProteinsMyosins

Identifiers

PMID27932498
PMCPMC5341729
OpenAlexW2560390134

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.