Evidence map›Paper›PMID 27932495›Full record

ArticleMolecular biology of the cell2017

Modulations of SIR-nucleosome interactions of reconstructed yeast silent pre-heterochromatin by O-acetyl-ADP-ribose and magnesium.

Shu-Yun Tung, Sue-Hong Wang, Sue-Ping Lee, Shu-Ping Tsai, Hsiao-Hsuian Shen, Feng-Jung Chen, Yu-Yi Wu, Sheng-Pin Hsiao, Gunn-Guang Liou

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Micronutrient Status and Breast Cancer: A Narrative Review.International journal of molecular sciences · 2024
    Review
  2. Review
  3. Hyphal Growth inMicrobiology spectrum · 2023
    Article
  4. Article
  5. The Versatility of Sirtuin-1 in Endocrinology and Immunology.Frontiers in cell and developmental biology · 2020
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Shu-Yun TungInstitute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan.
Sue-Hong WangDepartment of Biomedical Sciences, Chung Shan Medical University, Taichung 402, Taiwan.
Sue-Ping LeeInstitute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan.
Shu-Ping TsaiInstitute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan.
Hsiao-Hsuian ShenInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli 350, Taiwan.
Feng-Jung ChenInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli 350, Taiwan.
Yu-Yi WuInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli 350, Taiwan.
Sheng-Pin HsiaoInstitute of Molecular and Genomic Medicine, National Health Research Institutes, Miaoli 350, Taiwan.
Gunn-Guang LiouInstitute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan bogun@gate.sinica.edu.tw emguang@yahoo.com.tw.
Institute of Molecular Biology, Academia Sinica · TWNational Health Research Institutes · TWChung Shan Medical University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yeast silent heterochromatin provides an excellent model with which to study epigenetic inheritance. Previously we developed an in vitro assembly system to demonstrate the formation of filament structures with requirements that mirror yeast epigenetic gene silencing in vivo. However, the properties of these filaments were not investigated in detail. Here we show that the assembly system requires Sir2, Sir3, Sir4, nucleosomes, and O-acetyl-ADP-ribose. We also demonstrate that all Sir proteins and nucleosomes are components of these filaments to prove that they are SIR-nucleosome filaments. Furthermore, we show that the individual localization patterns of Sir proteins on the SIR-nucleosome filament reflect those patterns on telomeres in vivo. In addition, we reveal that magnesium exists in the SIR-nucleosome filament, with a role similar to that for chromatin condensation. These results suggest that a small number of proteins and molecules are sufficient to mediate the formation of a minimal yeast silent pre-heterochromatin in vitro.

Indexed as

Binding SitesChromatinChromatin Assembly and DisassemblyEpigenomicsGene SilencingHeterochromatinHistonesMagnesiumNucleosomesO-Acetyl-ADP-RiboseProtein Processing, Post-TranslationalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSirtuinsTelomereChromatinHeterochromatinHistonesMagnesiumNucleosomesO-Acetyl-ADP-RiboseSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR3 protein, S cerevisiaeSIR4 protein, S cerevisiaeSirtuins

Identifiers

PMID27932495
PMCPMC5341722
OpenAlexW2560142177

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.