Evidence map›Paper›PMID 27931189›Full record

ArticleBMC genomics2016

Adaptation of Propionibacterium freudenreichii to long-term survival under gradual nutritional shortage.

Flavia Figueira Aburjaile, Marine Rohmer, Hugues Parrinello, Marie-Bernadette Maillard, Eric Beaucher, Gwénaële Henry, Aurélie Nicolas, Marie-Noëlle Madec, Anne Thierry, Sandrine Parayre and 6 more

Abstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Fermentation of Peanut Slurry withFoods (Basel, Switzerland) · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Flavia Figueira AburjaileDepartment of General Biology, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Marine RohmerUMS BioCampus- MGX Montpellier GenomiX, Institut de Génomique Fonctionelle, 141, rue de la Cardonnille, 34094, Montpellier Cedex 05, France.
Hugues ParrinelloUMS BioCampus- MGX Montpellier GenomiX, Institut de Génomique Fonctionelle, 141, rue de la Cardonnille, 34094, Montpellier Cedex 05, France.
Marie-Bernadette MaillardINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Eric BeaucherINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Gwénaële HenryINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Aurélie NicolasINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Marie-Noëlle MadecINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Anne ThierryINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Sandrine ParayreINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Stéphanie-Marie DeutschINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Muriel Cocaign-BousquetLISBP, Université de Toulouse, CNRS, INRA, INSA, 135 avenue de Rangueil, Toulouse, 31077, France.
Anderson MiyoshiDepartment of General Biology, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Vasco AzevedoDepartment of General Biology, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Yves Le LoirINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France.
Hélène FalentinINRA, UMR 1253, Science et Technologie du Lait et de l' Œuf, 35000, Rennes, France. helene.falentin@rennes.inra.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPropionibacterium freudenreichii is an Actinobacterium widely used in the dairy industry as a ripening culture for Swiss-type cheeses, for vitamin B12 production and some strains display probiotic properties. It is reportedly a hardy bacterium, able to survive the cheese-making process and digestive stresses.

resultsDuring this study, P. freudenreichii CIRM-BIA 138 (alias ITG P9), which has a generation time of five hours in Yeast Extract Lactate medium at 30 °C under microaerophilic conditions, was incubated for 11 days (9 days after entry into stationary phase) in a culture medium, without any adjunct during the incubation. The carbon and free amino acids sources available in the medium, and the organic acids produced by the strain, were monitored throughout growth and survival. Although lactate (the preferred carbon source for P. freudenreichii) was exhausted three days after inoculation, the strain sustained a high population level of 9.3 log

conclusionsP. freudenreichii adapts its metabolism during entry into stationary phase by down-regulating oxidative phosphorylation, glycolysis, and the Wood-Werkman cycle by exploiting new nitrogen (glutamate, glycine, alanine) sources, by down-regulating the transcription, translation and secretion of protein. Utilization of polyphosphates was suggested.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsCarbonCulture MediaDown-RegulationGlycolysisHydrogen-Ion ConcentrationMetabolomeOxidative PhosphorylationOxygenPropionibacterium freudenreichiiRNA, BacterialSequence Analysis, RNABacterial ProteinsCarbonCulture MediaOxygenRNA, BacterialAdaptationLong-term survivalPropionibacterium freudenreichiiRNA-seqStationary phase

Identifiers

PMID27931189
PMCPMC5146858

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.