Evidence map›Paper›PMID 27930885›Full record

ArticleACS synthetic biology2017

Robust Synthetic Circuits for Two-Dimensional Control of Gene Expression in Yeast.

Andrés Aranda-Díaz, Kieran Mace, Ignacio Zuleta, Patrick Harrigan, Hana El-Samad

Abstract read
In one paragraph

Article in ACS synthetic biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Functional dissection ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Surveying the global landscape of post-transcriptional regulators.Nature structural & molecular biology · 2023
    Article
  17. Review
  18. A Toolkit for Precise, Multigene Control inACS synthetic biology · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrés Aranda-DíazDepartment of Biochemistry and Biophysics, University of California San Francisco , San Francisco, California 94158, United States.ORCID 0000-0002-0566-4901
Kieran MaceDepartment of Biochemistry and Biophysics, University of California San Francisco , San Francisco, California 94158, United States.ORCID 0000-0002-8131-3118
Ignacio ZuletaDepartment of Biochemistry and Biophysics, University of California San Francisco , San Francisco, California 94158, United States.
Patrick HarriganDepartment of Biochemistry and Biophysics, University of California San Francisco , San Francisco, California 94158, United States.
Hana El-SamadDepartment of Biochemistry and Biophysics, University of California San Francisco , San Francisco, California 94158, United States.

Funding

Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
BMI Bioinformatics Training GrantsT32GM067547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, RYAN D. · 2003 to 2022
$6.6M
Integrative Program in Complex Biological System (ipCBS)T32EB009383 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE, WEINER, ORION D · 2009 to 2022
$3.2M
NIBIB NIH HHS T32 EB009383NIGMS NIH HHS P50 GM081879NIGMS NIH HHS T32 GM067547
6 · The paper itself

Abstract

Cellular phenotypes are the result of complex interactions between many components. Understanding and predicting the system level properties of the resulting networks requires the development of perturbation tools that can simultaneously and independently modulate multiple cellular variables. Here, we develop synthetic modules that use different arrangements of two transcriptional regulators to achieve either concurrent and independent control of the expression of two genes, or decoupled control of the mean and variance of a single gene. These modules constitute powerful tools to probe the quantitative attributes of network wiring and function.

Indexed as

Computer SimulationGene ExpressionGene Expression RegulationGene Regulatory NetworksSaccharomyces cerevisiaeTranscription, Geneticcontrolmating pathwaynoiseorthogonalsic1

Identifiers

PMID27930885
PMCPMC5507677

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.