Evidence map›Paper›PMID 27930807›Full record

ArticleCurrent protocols in bioinformatics2016

Exploring FlyBase Data Using QuickSearch.

Steven J Marygold, Giulia Antonazzo, Helen Attrill, Marta Costa, Madeline A Crosby, Gilberto Dos Santos, Joshua L Goodman, L Sian Gramates, Beverley B Matthews, Alix J Rey and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Current protocols in bioinformatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Using FlyBase to Find Functionally Related Drosophila Genes.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Steven J MarygoldDepartment of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom.
Giulia AntonazzoDepartment of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom.
Helen AttrillDepartment of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom.
Marta CostaDepartment of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom.
Madeline A CrosbyThe Biological Laboratories, Harvard University, Cambridge, Massachusetts.
Gilberto Dos SantosThe Biological Laboratories, Harvard University, Cambridge, Massachusetts.
Joshua L GoodmanDepartment of Biology, Indiana University, Bloomington, Indiana.
L Sian GramatesThe Biological Laboratories, Harvard University, Cambridge, Massachusetts.
Beverley B MatthewsThe Biological Laboratories, Harvard University, Cambridge, Massachusetts.
Alix J ReyDepartment of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom.
Jim ThurmondDepartment of Biology, Indiana University, Bloomington, Indiana.
FlyBase Consortium

Funding

FLYBASE: A DROSOPHILA RELATIONAL DATABASEP41HG000739 · NHGRI · HARVARD UNIVERSITY · PI GELBART, WILLIAM MARTIN · 1992 to 2014
$56.6M
Resource Project CoreU41HG000739 · NHGRI · HARVARD UNIVERSITY · PI PERRIMON, NORBERT · 2014 to 2022
$32.3M
Medical Research Council G1000968NHGRI NIH HHS P41 HG000739NHGRI NIH HHS U41 HG000739
6 · The paper itself

Abstract

FlyBase (flybase.org) is the primary online database of genetic, genomic, and functional information about Drosophila species, with a major focus on the model organism Drosophila melanogaster. The long and rich history of Drosophila research, combined with recent surges in genomic-scale and high-throughput technologies, mean that FlyBase now houses a huge quantity of data. Researchers need to be able to rapidly and intuitively query these data, and the QuickSearch tool has been designed to meet these needs. This tool is conveniently located on the FlyBase homepage and is organized into a series of simple tabbed interfaces that cover the major data and annotation classes within the database. This unit describes the functionality of all aspects of the QuickSearch tool. With this knowledge, FlyBase users will be equipped to take full advantage of all QuickSearch features and thereby gain improved access to data relevant to their research. © 2016 by John Wiley & Sons, Inc.

Indexed as

Databases, GeneticAnimalsDrosophila melanogasterGenomeGenomicsbiological databaseDrosophila melanogasterFlyBasequery toolsQuickSearch

Identifiers

PMID27930807
PMCPMC5152691

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.