Evidence map›Paper›PMID 27930340›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites in Arabidopsis.

Yun Ju Kim, Ruozhong Wang, Lei Gao, Dongming Li, Chi Xu, Hyunggon Mang, Jien Jeon, Xiangsong Chen, Xuehua Zhong, June M Kwak and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
21.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 107 citations in OpenAlex.

  1. Article
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  9. Structure-function analyses revealCurrent research in structural biology · 2024
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  12. HDAC3 Knockdown Dysregulates Juvenile Hormone and Apoptosis-Related Genes inInternational journal of molecular sciences · 2022
    Article
  13. HISTONE DEACETYLASE 9 transduces heat signal in plant cells.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Review
  16. Review
  17. Review
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  20. Mysteries of gene regulation: Promoters are not the sole triggers of gene expression.Computational and structural biotechnology journal · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Yun Ju KimDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521; yjkim77@ibs.re.kr xuemei.chen@ucr.edu.
Ruozhong WangDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521.
Lei GaoGuangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China.
Dongming LiSchool of Life Sciences, Lanzhou University, Lanzhou 730000, China.
Chi XuGuangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China.
Hyunggon MangCenter for Plant Aging Research, Institute for Basic Science, Daegu 305-811, South Korea.
Jien JeonCenter for Plant Aging Research, Institute for Basic Science, Daegu 305-811, South Korea.
Xiangsong ChenLaboratory of Genetics, Wisconsin Institutes for Discovery, University of Wisconsin-Madison, Madison, WI 53706.
Xuehua ZhongLaboratory of Genetics, Wisconsin Institutes for Discovery, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0002-2350-0046
June M KwakCenter for Plant Aging Research, Institute for Basic Science, Daegu 305-811, South Korea.
Beixin MoGuangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China.
Langtao XiaoCollege of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China.
Xuemei ChenDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521; yjkim77@ibs.re.kr xuemei.chen@ucr.edu.ORCID 0000-0002-5209-1157
University of California, Riverside · USShenzhen University · CNInstitute for Basic Science · KRDaegu Gyeongbuk Institute of Science and Technology · KRHunan Agricultural University · CNLanzhou University · CNUniversity of Wisconsin–Madison · US

Funding

Regulation of APETALA2 in flower development in ArabidopsisR01GM061146 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2000 to 2022
$6.5M
NIGMS NIH HHS R01 GM061146
6 · The paper itself

Abstract

Histone acetylation is a major epigenetic control mechanism that is tightly linked to the promotion of gene expression. Histone acetylation levels are balanced through the opposing activities of histone acetyltransferases (HATs) and histone deacetylases (HDACs). Arabidopsis HDAC genes (AtHDACs) compose a large gene family, and distinct phenotypes among AtHDAC mutants reflect the functional specificity of individual AtHDACs However, the mechanisms underlying this functional diversity are largely unknown. Here, we show that POWERDRESS (PWR), a SANT (SWI3/DAD2/N-CoR/TFIII-B) domain protein, interacts with HDA9 and promotes histone H3 deacetylation, possibly by facilitating HDA9 function at target regions. The developmental phenotypes of pwr and hda9 mutants were highly similar. Three lysine residues (K9, K14, and K27) of H3 retained hyperacetylation status in both pwr and hda9 mutants. Genome-wide H3K9 and H3K14 acetylation profiling revealed elevated acetylation at largely overlapping sets of target genes in the two mutants. Highly similar gene-expression profiles in the two mutants correlated with the histone H3 acetylation status in the pwr and hda9 mutants. In addition, PWR and HDA9 modulated flowering time by repressing AGAMOUS-LIKE 19 expression through histone H3 deacetylation in the same genetic pathway. Finally, PWR was shown to physically interact with HDA9, and its SANT2 domain, which is homologous to that of subunits in animal HDAC complexes, showed specific binding affinity to acetylated histone H3. We therefore propose that PWR acts as a subunit in a complex with HDA9 to result in lysine deacetylation of histone H3 at specific genomic targets.

Indexed as

AcetylationArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHistone DeacetylasesHistonesHumansLysineMutationProtein DomainsProtein Processing, Post-TranslationalTranscription FactorsTranscriptomeArabidopsis ProteinsHDA9 protein, ArabidopsisHistone DeacetylasesHistonesLysinePOWERDRESS protein, ArabidopsisTranscription FactorsAGL19HDA9histone deacetylationPOWERDRESSSANT domain

Identifiers

PMID27930340
PMCPMC5187680
OpenAlexW2560227945

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.