Evidence map›Paper›PMID 27929375›Full record

ArticleeLife2016

Implications of the differing roles of the β1 and β3 transmembrane and cytoplasmic domains for integrin function.

Zhenwei Lu, Sijo Mathew, Jiang Chen, Arina Hadziselimovic, Riya Palamuttam, Billy G Hudson, Reinhard Fässler, Ambra Pozzi, Charles R Sanders, Roy Zent

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Integrating integrins with the hallmarks of cancer.Matrix biology : journal of the International Society for Matrix Biology · 2024
    Review
  4. Article
  5. Article
  6. From mesenchymal niches to engineeredMaterials today. Bio · 2022
    Article
  7. Article
  8. The Vanderbilt O'Brien Kidney Center.American journal of physiology. Renal physiology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Unique transmembrane domain interactions differentially modulate integrin αvβ3 and αIIbβ3 function.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Multiscale model of integrin adhesion assembly.PLoS computational biology · 2019
    Article
  15. Article
  16. De novo designed transmembrane peptides activating the α5β1 integrin.Protein engineering, design & selection : PEDS · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. Lucky kindlin: A cloverleaf at the integrin tail.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Zhenwei LuDepartment of Biochemistry, Vanderbilt University Medical Center, Nashville, United States.
Sijo MathewDivision of Nephrology, Department of Medicine, Vanderbilt Medical Center, Nashville, United States.
Jiang ChenDepartment of Biochemistry, Vanderbilt University Medical Center, Nashville, United States.
Arina HadziselimovicDepartment of Biochemistry, Vanderbilt University Medical Center, Nashville, United States.
Riya PalamuttamDepartment of Biochemistry, Vanderbilt University Medical Center, Nashville, United States.
Billy G HudsonDepartment of Biochemistry, Vanderbilt University Medical Center, Nashville, United States.
Reinhard FässlerDepartment of Molecular Medicine, Max Planck Institute of Biochemistry, Martinsried, Germany.
Ambra PozziDivision of Nephrology, Department of Medicine, Vanderbilt Medical Center, Nashville, United States.
Charles R SandersDepartment of Biochemistry, Vanderbilt University Medical Center, Nashville, United States.ORCID 0000-0003-2046-2862
Roy ZentDivision of Nephrology, Department of Medicine, Vanderbilt Medical Center, Nashville, United States.ORCID 0000-0003-2983-8133
Vanderbilt University Medical Center · USVeterans Health Administration · USMax Planck Institute of Biochemistry · DEVirginia Tech · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OWEN P MCGUINNESS · 2012 to 2026
$29.3M
TRANSGENIC MOUSE/ ES CELL SHARES RESOURCESP60DK020593 · NIDDK · VANDERBILT UNIVERSITY · PI MCGUINNESS, OWEN P · 1986 to 2011
$28.1M
Shop Module CoreP30EY008126 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Kevin L Schey · 1989 to 2026
$19.6M
Vanderbilt Mouse Metabolic Physiology CenterU24DK059637 · NIDDK · VANDERBILT UNIVERSITY · PI WASSERMAN, DAVID H · 2001 to 2015
$14.9M
Betal Integrin and Renal TubulogenesisR01DK075594 · NIDDK · VANDERBILT UNIVERSITY · PI ZENT, ROY · 2008 to 2015
$2.6M
Integrin/TGF-beta Axis in Tubulointerstitial FibrosisR01DK095761 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI POZZI, AMBRA · 2013 to 2016
$1.4M
Structure Function Analysis of Integrins alpha1beta1 and alpha2beta2R01DK083187 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SANDERS, CHARLES R, ZENT, ROY · 2010 to 2013
$1.3M
Upgrade of GE 3.0T SIGNA MRI Scanner for Enhanced NeuroimagingS10RR026677 · NCRR · MEDICAL COLLEGE OF WISCONSIN · PI HYDE, JAMES S · 2010 to 2010
$500k
The ILK/PINCH/Parvin complex in renal tubulogenesisI01BX002196 · VA · VETERANS HEALTH ADMINISTRATION · PI ZENT, ROY · 2013 to 2025
–
Role of Collagen Binding Receptors in GlomerulosclerosisI01BX002025 · VA · VETERANS HEALTH ADMINISTRATION · PI AMBRA POZZI · 2013 to 2026
–
BLRD VA I01 BX002025BLRD VA I01 BX002196NCI NIH HHS P30 CA068485NCRR NIH HHS S10 RR026677NEI NIH HHS P30 EY008126NIDDK NIH HHS L40 DK069221NIDDK NIH HHS P30 DK020593NIDDK NIH HHS P30 DK058404NIDDK NIH HHS P60 DK020593NIDDK NIH HHS R01 DK075594NIDDK NIH HHS R01 DK083187NIDDK NIH HHS R01 DK095761NIDDK NIH HHS U24 DK059637
6 · The paper itself

Abstract

Integrins are transmembrane receptors composed of α and β subunits. Although most integrins contain β1, canonical activation mechanisms are based on studies of the platelet integrin, αIIbβ3. Its inactive conformation is characterized by the association of the αIIb transmembrane and cytosolic domain (TM/CT) with a tilted β3 TM/CT that leads to activation when disrupted. We show significant structural differences between β1 and β3 TM/CT in bicelles. Moreover, the 'snorkeling' lysine at the TM/CT interface of β subunits, previously proposed to regulate αIIbβ3 activation by ion pairing with nearby lipids, plays opposite roles in β1 and β3 integrin function and in neither case is responsible for TM tilt. A range of affinities from almost no interaction to the relatively high avidity that characterizes αIIbβ3 is seen between various α subunits and β1 TM/CTs. The αIIbβ3-based canonical model for the roles of the TM/CT in integrin activation and function clearly does not extend to all mammalian integrins.

Indexed as

Protein MultimerizationAmino Acid SubstitutionCell AdhesionCells, CulturedEpithelial CellsHumansIntegrin alpha1Integrin beta1Integrin beta3Mutagenesis, Site-DirectedMutant ProteinsPlatelet Membrane Glycoprotein IIbProtein BindingIntegrin alpha1Integrin beta1Integrin beta3Mutant ProteinsPlatelet Membrane Glycoprotein IIbbiochemistrycell biologyextracellular matrixintegrinmousestructural biology

Identifiers

PMID27929375
PMCPMC5207772
OpenAlexW2560520895

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.