Evidence map›Paper›PMID 27928163›Full record

ArticleJournal of human genetics2017

TBCD may be a causal gene in progressive neurodegenerative encephalopathy with atypical infantile spinal muscular atrophy.

Toshio Ikeda, Akihiko Nakahara, Rie Nagano, Maiko Utoyama, Megumi Obara, Hiroshi Moritake, Tamayo Uechi, Jun Mitsui, Hiroyuki Ishiura, Jun Yoshimura and 6 more

Abstract readCase Reports
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. A Variant inInternational journal of molecular sciences · 2023
    Article
  3. CRISPR/Cas9 andInternational journal of molecular sciences · 2023
    Article
  4. Novel Compound Heterozygous Variants inChildren (Basel, Switzerland) · 2021
    Article
  5. Biallelic pathogenic variants in TBCD-related neurodevelopment disease with mild clinical features.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2019
    Article
  6. Clinical Application of Genome and Exome Sequencing as a Diagnostic Tool for Pediatric Patients: a Scoping Review of the Literature.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Toshio IkedaDivision of Pediatrics, Department of Developmental and Urological-Reproductive Medicine Pediatrics, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.ORCID http://orcid.org/0000-0003-0055-9157
Akihiko NakaharaDepartment of Pediatrics, National Hospital Organization Miyazaki Hospital, Miyazaki, Japan.
Rie NaganoDepartment of Pediatrics, Aisenkai Nichinan Hospital, Miyazaki, Japan.
Maiko UtoyamaDivision of Pediatrics, Department of Developmental and Urological-Reproductive Medicine Pediatrics, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Megumi ObaraDivision of Pediatrics, Department of Developmental and Urological-Reproductive Medicine Pediatrics, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Hiroshi MoritakeDivision of Pediatrics, Department of Developmental and Urological-Reproductive Medicine Pediatrics, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Tamayo UechiFrontier Science Research Center, University of Miyazaki, Miyazaki, Japan.
Jun MitsuiDepartment of Neurology, The University of Tokyo, Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0001-7425-4765
Hiroyuki IshiuraDepartment of Neurology, The University of Tokyo, Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0003-2975-7309
Jun YoshimuraDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.
Koichiro DoiDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.
Naoya KenmochiFrontier Science Research Center, University of Miyazaki, Miyazaki, Japan.
Shinichi MorishitaDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.
Ichizo NishinoDepartment of Neuromuscular Research, National Institute of Neuroscience, National Center of Neurology and Psychiatry, Tokyo, Japan.ORCID http://orcid.org/0000-0001-9452-112X
Shoji TsujiDepartment of Neurology, The University of Tokyo, Graduate School of Medicine, Tokyo, Japan.
Hiroyuki NunoiDivision of Pediatrics, Department of Developmental and Urological-Reproductive Medicine Pediatrics, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
University of Miyazaki · JPThe University of Tokyo · JPNational Center of Neurology and Psychiatry · JPNational Hospital Organization Miyazaki Higashi Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spinal muscular atrophy (SMA) is an autosomal recessive neurodegenerative disorder caused by survival motor neuron gene mutations. Variant forms of SMA accompanied by additional clinical presentations have been classified as atypical SMA and are thought to be caused by variants in as yet unidentified causative genes. Here, we presented the clinical findings of two siblings with an SMA variant followed by progressive cerebral atrophy, and the results of whole-exome sequencing analyses of the family quartet that was performed to identify potential causative variants. We identified two candidate homozygous missense variants, R942Q in the tubulin-folding cofactor D (TBCD) gene and H250Q in the bromo-adjacent homology domain and coiled-coil containing 1 (BAHCC1) gene, located on chromosome 17q25.3 with an interval of 1.4 Mbp. The in silico analysis of both variants suggested that TBCD rather than BAHCC1 was likely the pathogenic gene (TBCD sensitivity, 0.68; specificity, 0.97; BAHCC1 sensitivity, 1.00; specificity, 0.00). Thus, our results show that TBCD is a likely novel candidate gene for atypical SMA with progressive cerebral atrophy. TBCD is predicted to have important functions on tubulin integrity in motor neurons as well as in the central nervous system.

Indexed as

Brain DiseasesChildFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHomozygoteHumansMicrotubule-Associated ProteinsMotor NeuronsMutation, MissensePedigreeProteinsSpinal Muscular Atrophies of ChildhoodBAHCC1 protein, humanMicrotubule-Associated ProteinsProteinsTBCD protein, human

Identifiers

PMID27928163
OpenAlexW2559812031

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.