Evidence map›Paper›PMID 27927917›Full record

ArticleJournal of clinical microbiology2017

Zika Virus Testing Considerations: Lessons Learned from the First 80 Real-Time Reverse Transcription-PCR-Positive Cases Diagnosed in New York State.

Kirsten St George, Inderbir S Sohi, Elizabeth M Dufort, Amy B Dean, Jennifer L White, Ronald Limberger, Jamie N Sommer, Stephanie Ostrowski, Susan J Wong, P Bryon Backenson and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Kirsten St GeorgeWadsworth Center, New York State Department of Health, Albany, New York, USA Kirsten.St.George@health.ny.gov.ORCID 0000-0001-5168-763X
Inderbir S SohiDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Elizabeth M DufortDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Amy B DeanWadsworth Center, New York State Department of Health, Albany, New York, USA.
Jennifer L WhiteDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Ronald LimbergerWadsworth Center, New York State Department of Health, Albany, New York, USA.
Jamie N SommerDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Stephanie OstrowskiDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Susan J WongWadsworth Center, New York State Department of Health, Albany, New York, USA.
P Bryon BackensonDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Daniel KuhlesDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Debra BlogDivision of Epidemiology, New York State Department of Health, Albany, New York, USA.
Jill TaylorWadsworth Center, New York State Department of Health, Albany, New York, USA.
Brad HuttonOffice of Public Health, New York State Department of Health, Albany, New York, USA.
Howard A ZuckerOffice of the Commissioner, New York State Department of Health, Albany, New York, USA.
New York State Department of Health · US

Funding

NCEZID CDC HHS U50 CK000423OSTLTS CDC HHS U38 OT000143
6 · The paper itself

Abstract

The performance and interpretation of laboratory tests for Zika virus (ZKV) continue to be evaluated. Serology is cross-reactive, laborious, and frequently difficult to interpret, and serum was initially solely recommended for molecular diagnosis. ZKV testing was initiated in January 2016 in New York State for symptomatic patients, pregnant women, their infants, and patients with Guillain-Barré syndrome who had traveled to areas with ZKV transmission. Subsequently, eligibility was expanded to pregnant women with sexual partners with similar travel histories. Serum and urine collected within 4 weeks of symptom onset or within 6 weeks of travel were tested with real-time reverse transcription-PCR (RT-PCR) assays targeting the ZKV envelope and NS2B genes. In this review of lessons learned from the first 80 positive cases in NYS, ZKV RNA was detected in urine only in 50 patients, in serum only in 19 patients, and in both samples concurrently in 11 patients, with average viral loads in urine a log higher than those in serum. Among 93 positive samples from the 80 patients, 41 were positive on both gene assays, 52 were positive on the envelope only, and none were positive on the NS2B only. Of the 80 infected patients, test results for 74 (93%) would have defined their infection status as not detected or equivocal if the requirement for positive results from two assay targets (two-target-positive requirement) in the initial federal guidance to public health laboratories was enforced, if urine was not tested, or if the extended eligibility time for molecular testing was not implemented. These changes facilitated more extensive molecular diagnosis of ZKV, reducing reliance on time-consuming and potentially inconclusive serology.

Indexed as

AdolescentAdultAgedChildFemaleHumansMaleMiddle AgedNew YorkPregnancyReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSerumUrineYoung AdultZika Virusdiagnosticsemerging pathogensmolecular methodsspecimen selectionviral diagnosis

Identifiers

PMID27927917
PMCPMC5277524
OpenAlexW2560424147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.