Evidence map›Paper›PMID 27927916›Full record

ArticleJournal of clinical microbiology2017

Field Validation of SYBR Green- and TaqMan-Based Real-Time PCR Using Biopsy and Swab Samples To Diagnose American Tegumentary Leishmaniasis in an Area Where Leishmania (Viannia) braziliensis Is Endemic.

Ciro Martins Gomes, Mariana Vicente Cesetti, Natália Aparecida de Paula, Sebastián Vernal, Gaurav Gupta, Raimunda Nonata Ribeiro Sampaio, Ana Maria Roselino

Open access · bronzeAbstract readComparative StudyValidation Study
In one paragraph

Article in Journal of clinical microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 2 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 2 syntheses or guidelines pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Persistence ofBiomedicines · 2025
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  11. Validation of a Real-Time PCR for the Diagnosis ofTropical medicine and infectious disease · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Evaluation of the Diagnostic Sensitivity of the VIASURETransboundary and emerging diseases · 2023
    Article
  16. Article
  17. Review
  18. Review
  19. An Overview on Leishmaniasis in Romania: Diagnosis and Therapeutics.Tropical medicine and infectious disease · 2022
    Review
  20. First Report of an AsymptomaticInternational journal of environmental research and public health · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ciro Martins GomesDivision of Dermatology, Department of Medical Clinics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo State, Brazil ciromgomes@gmail.com.ORCID 0000-0002-3069-6884
Mariana Vicente CesettiDivision of Dermatology, Department of Medical Clinics, University of Brasília, Brasília, Federal District, Brazil.
Natália Aparecida de PaulaLaboratory of Dermatology, University Hospital of Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo State, Brazil.
Sebastián VernalDivision of Dermatology, Department of Medical Clinics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo State, Brazil.
Gaurav GuptaDepartment of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo State, Brazil.
Raimunda Nonata Ribeiro SampaioDivision of Dermatology, Department of Medical Clinics, University of Brasília, Brasília, Federal District, Brazil.
Ana Maria RoselinoDivision of Dermatology, Department of Medical Clinics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo State, Brazil.
Universidade de São Paulo · BRUniversidade de Brasília · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The precise diagnosis of American tegumentary leishmaniasis (ATL) is an essential task due to the disease's associated morbidity. A noninvasive, extremely sensitive, and highly specific exam is critical, particularly for mucosal leishmaniasis (ML), in which a low parasite quantity is expected. We aimed to compare the diagnostic accuracy of swab and biopsy sample analysis using SYBR Green- and TaqMan-based real-time PCR (qPCR) assays with that of a composite reference standard consisting of the Montenegro skin test, serology, histopathology, smears, culture, and conventional PCR. In total, 55 patients with ATL (ML, 18 patients; cutaneous leishmaniasis [CL], 37 patients) and 36 patients without ATL were studied. qPCR analysis of swabs was more accurate when using SYBR Green (87.88%; 95% confidence interval [CI], 77.86 to 93.73 patients) than when using TaqMan (78.79%; 95% CI, 67.49 to 86.92%) (P = 0.031). SYBR Green (84.72%; 95% CI, 74.68 to 91.25%) was also more accurate than TaqMan (73.61%; 95% CI, 62.42 to 82.41%) for biopsy samples (P = 0.008). All qPCR methods were 100% specific. Swabs and biopsy specimens had similar sensitivity when using the same chemistry (P = 0.125 for SYBR Green and P = 0.625 for TaqMan). Moreover, qPCR achieved better performance than most existing techniques used for the diagnosis of ATL and also detected the Leishmania parasite in a greater proportion of patients than the associated histopathology, smear, culture, and conventional PCR techniques did. Swabs therefore represent a useful diagnostic tool because they not only are noninvasive but also can achieve an accuracy similar to that of biopsy samples. The high accuracy of SYBR Green-based qPCR may also reduce the requirement for associated parasitological tests for ATL diagnosis.

Indexed as

Endemic DiseasesAdultAgedBenzothiazolesBiopsyDiaminesFemaleHumansLeishmania braziliensisLeishmaniasis, MucocutaneousMaleMiddle AgedMolecular Diagnostic TechniquesOrganic ChemicalsProspective StudiesQuinolinesBenzothiazolesDiaminesOrganic ChemicalsQuinolinesSYBR Green Idiagnosiskinetoplast DNAleishmaniasismucocutaneousreal-time PCRreal-time polymerase chain reaction

Identifiers

PMID27927916
PMCPMC5277523
OpenAlexW2560754340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.