Evidence map›Paper›PMID 27926877›Full record

ArticleCell reports2016

PTBP1 and PTBP2 Serve Both Specific and Redundant Functions in Neuronal Pre-mRNA Splicing.

John K Vuong, Chia-Ho Lin, Min Zhang, Liang Chen, Douglas L Black, Sika Zheng

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 146 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  7. From development to disease: the neuronal role of hnRNPs through the lens ofFrontiers in cell and developmental biology · 2026
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. The Implications of Alternative Splicing Regulation for Maximum Lifespan.bioRxiv : the preprint server for biology · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Cell-Type-Specific Splicing of Transcription Regulators andThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

John K VuongDivision of Biomedical Science, University of California, Riverside, Riverside, CA 92521, USA.
Chia-Ho LinDepartment of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Min ZhangDivision of Biomedical Science, University of California, Riverside, Riverside, CA 92521, USA.
Liang ChenDivision of Molecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.
Douglas L BlackDepartment of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA 90095, USA. Electronic address: dougb@microbio.ucla.edu.
Sika ZhengDivision of Biomedical Science, University of California, Riverside, Riverside, CA 92521, USA. Electronic address: sikaz@ucr.edu.
University of California, Riverside · USUniversity of California, Los Angeles · USUniversity of Southern California · US

Funding

The Regulation of Neuronal Exon SplicingR01GM049662 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BLACK, DOUGLAS L · 1998 to 2019
$6.5M
Statistical methods for the study of alternative splicing using deep sequencingR01GM097230 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, LIANG · 2011 to 2014
$1.4M
Alternative splicing and nonsense-mediated mRNA decay in neural developmentR00MH096807 · NIMH · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHENG, SIKA · 2014 to 2016
$747k
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM049662NIGMS NIH HHS R01 GM097230NIMH NIH HHS R00 MH096807
6 · The paper itself

Abstract

Families of alternative splicing regulators often contain multiple paralogs presumed to fulfill different functions. Polypyrimidine tract binding proteins PTBP1 and PTBP2 reprogram developmental pre-mRNA splicing in neurons, but how their regulatory networks differ is not understood. To compare their targeting, we generated a knockin allele that conditionally expresses PTBP1. Bred to a Ptbp2 knockout, the transgene allowed us to compare the developmental and molecular phenotypes of mice expressing only PTBP1, only PTBP2, or neither protein in the brain. This knockin Ptbp1 rescued a forebrain-specific, but not a pan-neuronal, Ptbp2 knockout, demonstrating both redundant and distinct roles for the proteins. Many developmentally regulated exons exhibited different sensitivities to PTBP1 and PTBP2. Nevertheless, the two paralogs displayed similar RNA binding across the transcriptome, indicating that their differential targeting does not derive from their RNA interactions, but from possible different cofactor interactions.

Indexed as

Alternative SplicingAnimalsBrainGene Expression RegulationGene Knock-In TechniquesHeterogeneous-Nuclear RibonucleoproteinsMiceMice, KnockoutNerve Tissue ProteinsNeuronsPolypyrimidine Tract-Binding ProteinRNA PrecursorsRNA SplicingHeterogeneous-Nuclear RibonucleoproteinsNerve Tissue ProteinsPolypyrimidine Tract-Binding ProteinPtbp1 protein, mousePtbp2 protein, mouseRNA Precursorsalternative splicingbrain developmentCLIPGeneSpliceneuronal differentiationPTBP1PTBP2RNA binding proteinsRNA-seqsplicing reprogramming

Identifiers

PMID27926877
PMCPMC5179036
OpenAlexW2559870281

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.