Evidence map›Paper›PMID 27926854›Full record

ArticleBiophysical journal2016

Structural Characterization and Statistical-Mechanical Model of Epidermal Patterns.

Duyu Chen, Wen Yih Aw, Danelle Devenport, Salvatore Torquato

Abstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Fluidization and anomalous density fluctuations in 2D Voronoi cell tissues with pulsating activity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. On the origins of order.Soft matter · 2022
    Article
  3. Article
  4. Unjamming and collective migration in MCF10A breast cancer cell lines.Biochemical and biophysical research communications · 2020
    Article
  5. Article
  6. Statistics of noisy growth with mechanical feedback in elastic tissues.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Duyu ChenDepartment of Chemistry, Princeton University, Princeton, New Jersey.
Wen Yih AwDepartment of Molecular Biology, Princeton University, Princeton, New Jersey.
Danelle DevenportDepartment of Molecular Biology, Princeton University, Princeton, New Jersey.
Salvatore TorquatoDepartment of Chemistry, Princeton University, Princeton, New Jersey; Department of Physics, Princeton University, Princeton, New Jersey; Princeton Institute for the Science and Technology of Materials, Princeton University, Princeton, New Jersey; Program in Applied and Computational Mathematics, Princeton University, Princeton, New Jersey. Electronic address: torquato@princeton.edu.

Funding

Multiscale coordination of planar cell polarityR01AR066070 · NIAMS · PRINCETON UNIVERSITY · PI DEVENPORT, DANELLE N · 2015 to 2025
$5.7M
NIAMS NIH HHS R01 AR066070
6 · The paper itself

Abstract

In proliferating epithelia of mammalian skin, cells of irregular polygon-like shapes pack into complex, nearly flat two-dimensional structures that are pliable to deformations. In this work, we employ various sensitive correlation functions to quantitatively characterize structural features of evolving packings of epithelial cells across length scales in mouse skin. We find that the pair statistics in direct space (correlation function) and Fourier space (structure factor) of the cell centroids in the early stages of embryonic development show structural directional dependence (statistical anisotropy), which is a reflection of the fact that cells are stretched, which promotes uniaxial growth along the epithelial plane. In the late stages, the patterns tend toward statistically isotropic states, as cells attain global polarization and epidermal growth shifts to produce the skin's outer stratified layers. We construct a minimalist four-component statistical-mechanical model involving effective isotropic pair interactions consisting of hard-core repulsion and extra short-range soft-core repulsion beyond the hard core, whose length scale is roughly the same as the hard core. The model parameters are optimized to match the sample pair statistics in both direct and Fourier spaces. By doing this, the parameters are biologically constrained. In contrast with many vertex-based models, our statistical-mechanical model does not explicitly incorporate information about the cell shapes and interfacial energy between cells; nonetheless, our model predicts essentially the same polygonal shape distribution and size disparity of cells found in experiments, as measured by Voronoi statistics. Moreover, our simulated equilibrium liquid-like configurations are able to match other nontrivial unconstrained statistics, which is a testament to the power and novelty of the model. The array of structural descriptors that we deploy enable us to distinguish between normal, mechanically deformed, and pathological skin tissues. Our statistical-mechanical model enables one to generate tissue microstructure at will for further analysis. We also discuss ways in which our model might be extended to better understand morphogenesis (in particular the emergence of planar cell polarity), wound healing, and disease-progression processes in skin, and how it could be applied to the design of synthetic tissues.

Indexed as

Epidermal CellsModels, BiologicalAnimalsAnisotropyEpidermisImage Processing, Computer-AssistedMiceStatistics as Topic

Identifiers

PMID27926854
PMCPMC5153564

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.