Evidence map›Paper›PMID 27926838›Full record

ArticleBiophysical journal2016

High-Resolution Mapping of a Repeat Protein Folding Free Energy Landscape.

Martin J Fossat, Thuy P Dao, Kelly Jenkins, Mariano Dellarole, Yinshan Yang, Scott A McCallum, Angel E Garcia, Doug Barrick, Christian Roumestand, Catherine A Royer

Abstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
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  5. A molten globule ensemble primes Arf1-GDP for the nucleotide switch.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  15. Review
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  17. Review
  18. How internal cavities destabilize a protein.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Martin J FossatBiological Sciences, Rensselaer Polytechnic Institute, Troy, New York.
Thuy P DaoDepartment of Biophysics, Johns Hopkins University, Baltimore, Maryland.
Kelly JenkinsBiological Sciences, Rensselaer Polytechnic Institute, Troy, New York.
Mariano DellaroleUnité de Virologie Structurale, Centre National de la Recherche Scientifique UMR 3569, Institut Pasteur, Paris, France.
Yinshan YangCentre de Biochimie Structurale, Centre National de la Recherche Scientifique UMR 5048, Institut National de la Santé et de la Recherche Médicale, Université de Montpellier, France.
Scott A McCallumCenter for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, New York.
Angel E GarciaDepartment of Physics, Rensselaer Polytechnic Institute, Troy, New York.
Doug BarrickDepartment of Biophysics, Johns Hopkins University, Baltimore, Maryland.
Christian RoumestandCentre de Biochimie Structurale, Centre National de la Recherche Scientifique UMR 5048, Institut National de la Santé et de la Recherche Médicale, Université de Montpellier, France.
Catherine A RoyerBiological Sciences, Rensselaer Polytechnic Institute, Troy, New York. Electronic address: royerc@rpi.edu.

Funding

REPEAT-PROTEINS;STABILITY, FOLDING KINETICS &EVOLUTIONR01GM068462 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BARRICK, DOUGLAS E. · 2005 to 2025
$6.3M
NIGMS NIH HHS R01 GM068462
6 · The paper itself

Abstract

A complete description of the pathways and mechanisms of protein folding requires a detailed structural and energetic characterization of the conformational ensemble along the entire folding reaction coordinate. Simulations can provide this level of insight for small proteins. In contrast, with the exception of hydrogen exchange, which does not monitor folding directly, experimental studies of protein folding have not yielded such structural and energetic detail. NMR can provide residue specific atomic level structural information, but its implementation in protein folding studies using chemical or temperature perturbation is problematic. Here we present a highly detailed structural and energetic map of the entire folding landscape of the leucine-rich repeat protein, pp32 (Anp32), obtained by combining pressure-dependent site-specific

Indexed as

Protein FoldingAmino Acid SequenceIntracellular Signaling Peptides and ProteinsModels, MolecularPressureProtein DomainsProtein UnfoldingThermodynamicsIntracellular Signaling Peptides and Proteins

Identifiers

PMID27926838
PMCPMC5153537

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.