Evidence map›Paper›PMID 27926837›Full record

ArticleBiophysical journal2016

The Significance of the Location of Mutations for the Native-State Dynamics of Human Lysozyme.

Minkoo Ahn, Christine L Hagan, Ana Bernardo-Gancedo, Erwin De Genst, Francisco N Newby, John Christodoulou, Anne Dhulesia, Mireille Dumoulin, Carol V Robinson, Christopher M Dobson and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Mapping HDX-MS Data to Protein Conformations through Training Ensemble-Based Models.Journal of the American Society for Mass Spectrometry · 2023
    Article
  3. Review
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Minkoo AhnDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Christine L HaganDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Ana Bernardo-GancedoDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Erwin De GenstDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Francisco N NewbyDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
John ChristodoulouInstitute of Structural and Molecular Biology, University College London and Birkbeck College, London, United Kingdom.
Anne DhulesiaDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Mireille DumoulinLaboratory of Enzymology and Protein Folding, Centre for Protein Engineering, InBios, Institute of Chemistry, University of Liege, Liege (Sart Tilman), Belgium.
Carol V RobinsonPhysical and Theoretical Chemistry Laboratory, University of Oxford, Oxford, United Kingdom.
Christopher M DobsonDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Janet R KumitaDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom. Electronic address: jrk38@cam.ac.uk.
University of Cambridge · GBBirkbeck, University of London · GBUniversity of Liège · BEUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E019927/1Wellcome Trust
6 · The paper itself

Abstract

The conversion of human lysozyme into amyloid fibrils is associated with a rare but fatal hereditary form of nonneuropathic systemic amyloidosis. The accumulation of large amounts of aggregated protein is thought to be initiated by the formation of transient intermediate species of disease-related lysozyme variants, essentially due to the loss of global cooperativity under physiologically relevant conditions. Interestingly, all five naturally occurring, amyloidogenic, single-point mutations are located in the β-domain of lysozyme, the region that is predominantly unfolded during the formation of the transient intermediate species. Given the lack of known naturally occurring, amyloidogenic, single-point mutations in the α-domain, we chose three specific mutations to address the effects that location may have on native-state dynamics, as studied by hydrogen-deuterium (HD) exchange experiments analyzed by NMR spectroscopy, and mass spectrometry. We compared the effect of a destabilizing α-domain mutation (I23A) with that of the well-characterized I59T β-domain variant. We also investigated the effect of a mutation that has minor effects on native-state stability at the domain interface (I56V) and compared it with that of a variant with similar stability within the C-helix (I89V). We show that when variants have similar reduced native-state stabilities, the location of the mutation (I23A versus I59T) is crucial to the native-state dynamics, with the α-domain mutation having a significantly lower ability to populate transient intermediate species under physiologically relevant conditions. Interestingly, the mutation at the interface (I56V) has a greater effect in facilitating the formation of transient intermediate species at elevated temperatures compared with the variants containing α-domain mutations, even though this mutation results in only minor changes to the native-state stability of lysozyme. These findings reveal that the location of specific mutations is an important factor in determining the native-state dynamical properties of human lysozyme in the context of its propensity to populate the aggregation-prone transient intermediate species associated with pathogenic amyloid formation.

Indexed as

MutationAmyloidEnzyme StabilityHumansModels, MolecularMuramidaseProtein DomainsProtein MultimerizationProtein Structure, SecondaryAmyloidMuramidase

Identifiers

PMID27926837
PMCPMC5153563
OpenAlexW2559755116

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.