Evidence map›Paper›PMID 27924562›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Single-Step Affinity Purification of ERK Signaling Complexes Using the Streptavidin-Binding Peptide (SBP) Tag.

Liu Yang, Alexey Veraksa

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Liu YangDepartment of Biology, University of Massachusetts Boston, 100 Morrissey Blvd., Boston, MA, 02125, USA.
Alexey VeraksaDepartment of Biology, University of Massachusetts Boston, 100 Morrissey Blvd., Boston, MA, 02125, USA. Alexey.veraksa@umb.edu.
University of Massachusetts Boston · US

Funding

Steroid-Dependent Changes in the Yorkie InteractomeR01GM105813 · NIGMS · EMORY UNIVERSITY · PI MOBERG, KENNETH H, VERAKSA, ALEXEY · 2013 to 2016
$1.1M
NIGMS NIH HHS R01 GM105813
6 · The paper itself

Abstract

Elucidation of biological functions of signaling proteins is facilitated by studying their protein-protein interaction networks. Affinity purification combined with mass spectrometry (AP-MS) has become a favorite method to study protein complexes. Here we describe a procedure for single-step purification of ERK (Rolled) and associated proteins from Drosophila cultured cells. The use of the streptavidin-binding peptide (SBP) tag allows for a highly efficient isolation of native ERK signaling complexes, which are suitable for subsequent analysis by mass spectrometry. Our analysis of the ERK interactome has identified both known and novel signaling components. This method can be easily adapted for SBP-based purification of protein complexes in any expression system.

Indexed as

Carrier ProteinsChromatography, AffinityAnimalsCell LineDrosophilaExtracellular Signal-Regulated MAP KinasesGene ExpressionGene OrderGenetic VectorsMultiprotein ComplexesProtein BindingProtein Interaction MappingRecombinant Fusion ProteinsSignal TransductionTransfectionCarrier ProteinsExtracellular Signal-Regulated MAP KinasesMultiprotein ComplexesRecombinant Fusion Proteinsstreptavidin-binding peptideAffinity purificationDrosophilaERKMass spectrometrySBPStreptavidin-binding peptide

Identifiers

PMID27924562
PMCPMC6488233
OpenAlexW2560844515

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.