ArticleNucleic acids research2017
PlaMoM: a comprehensive database compiles plant mobile macromolecules.
Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Studies on the Japanese soil-borne wheat mosaic virus movement protein highlight its ability to bind plant RNA.Virology journal · 2025Article
- CUCUME: An RNA methylation database integrating systemic mRNAs signals, GWAS and QTL genetic regulation and epigenetics in different tissues ofComputational and structural biotechnology journal · 2023Article
- Exact Bayesian inference for the detection of graft-mobile transcripts from sequencing data.Journal of the Royal Society, Interface · 2022Article
- Review
- Mobile Host mRNAs Are Translated to Protein in the Associated Parasitic PlantPlants (Basel, Switzerland) · 2021Article
- Tissue and regional expression patterns of dicistronic tRNA-mRNA transcripts in grapevine (Vitis vinifera) and their evolutionary co-appearance with vasculature in land plants.Horticulture research · 2021Article
- NAMS webserver: coding potential assessment and functional annotation of plant transcripts.Briefings in bioinformatics · 2021Article
- RNA Motifs and Modification Involve in RNA Long-Distance Transport in Plants.Frontiers in cell and developmental biology · 2021Review
- New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs.Nucleic acids research · 2020Article
- Intercellular and systemic trafficking of RNAs in plants.Nature plants · 2018Review
- Transcriptomics and co-expression networks reveal tissue-specific responses and regulatory hubs under mild and severe drought in papaya (Carica papaya L.).Scientific reports · 2018Article
- Elucidation of the Mechanisms of Long-Distance mRNA Movement in aPlant physiology · 2018Article
- RNA mobility in parasitic plant - host interactions.RNA biology · 2017Review
- An update on phloem transport: a simple bulk flow under complex regulation.F1000Research · 2017Review
- A Novel Phloem-Specific HVA22-Like Protein Facilitates Protein Movement via Plasmodesmata in Potato.Contact (Thousand Oaks (Ventura County, Calif.))Article
Corrections and comments
- Erratum issued
Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In plants, various phloem-mobile macromolecules including noncoding RNAs, mRNAs and proteins are suggested to act as important long-distance signals in regulating crucial physiological and morphological transition processes such as flowering, plant growth and stress responses. Given recent advances in high-throughput sequencing technologies, numerous mobile macromolecules have been identified in diverse plant species from different plant families. However, most of the identified mobile macromolecules are not annotated in current versions of species-specific databases and are only available as non-searchable datasheets. To facilitate study of the mobile signaling macromolecules, we compiled the PlaMoM (Plant Mobile Macromolecules) database, a resource that provides convenient and interactive search tools allowing users to retrieve, to analyze and also to predict mobile RNAs/proteins. Each entry in the PlaMoM contains detailed information such as nucleotide/amino acid sequences, ortholog partners, related experiments, gene functions and literature. For the model plant Arabidopsis thaliana, protein-protein interactions of mobile transcripts are presented as interactive molecular networks. Furthermore, PlaMoM provides a built-in tool to identify potential RNA mobility signals such as tRNA-like structures. The current version of PlaMoM compiles a total of 17 991 mobile macromolecules from 14 plant species/ecotypes from published data and literature. PlaMoM is available at http://www.systembioinfo.org/plamom/.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.