Evidence map›Paper›PMID 27923067›Full record

ArticlePLoS genetics2016

Chronological Lifespan in Yeast Is Dependent on the Accumulation of Storage Carbohydrates Mediated by Yak1, Mck1 and Rim15 Kinases.

Lu Cao, Yingzhi Tang, Zhenzhen Quan, Zhe Zhang, Stephen G Oliver, Nianshu Zhang

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
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  17. The Lipid Profile of theJournal of fungi (Basel, Switzerland) · 2022
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lu CaoCambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Sanger Building, United Kingdom.ORCID http://orcid.org/0000-0002-1581-4133
Yingzhi TangCambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Sanger Building, United Kingdom.
Zhenzhen QuanCambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Sanger Building, United Kingdom.
Zhe ZhangCambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Sanger Building, United Kingdom.
Stephen G OliverCambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Sanger Building, United Kingdom.
Nianshu ZhangCambridge Systems Biology Centre and Department of Biochemistry, University of Cambridge, Sanger Building, United Kingdom.
University of Cambridge · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Upon starvation for glucose or any other macronutrient, yeast cells exit from the mitotic cell cycle and acquire a set of characteristics that are specific to quiescent cells to ensure longevity. Little is known about the molecular determinants that orchestrate quiescence entry and lifespan extension. Using starvation-specific gene reporters, we screened a subset of the yeast deletion library representing the genes encoding 'signaling' proteins. Apart from the previously characterised Rim15, Mck1 and Yak1 kinases, the SNF1/AMPK complex, the cell wall integrity pathway and a number of cell cycle regulators were shown to be necessary for proper quiescence establishment and for extension of chronological lifespan (CLS), suggesting that entry into quiescence requires the integration of starvation signals transmitted via multiple signaling pathways. The CLS of these signaling mutants, and those of the single, double and triple mutants of RIM15, YAK1 and MCK1 correlates well with the amount of storage carbohydrates but poorly with transition-phase cell cycle status. Combined removal of the glycogen and trehalose biosynthetic genes, especially GSY2 and TPS1, nearly abolishes the accumulation of storage carbohydrates and severely reduces CLS. Concurrent overexpression of GSY2 and TSL1 or supplementation of trehalose to the growth medium ameliorates the severe CLS defects displayed by the signaling mutants (rim15Δyak1Δ or rim15Δmck1Δ). Furthermore, we reveal that the levels of intracellular reactive oxygen species are cooperatively controlled by Yak1, Rim15 and Mck1, and the three kinases mediate the TOR1-regulated accumulation of storage carbohydrates and CLS extension. Our data support the hypothesis that metabolic reprogramming to accumulate energy stores and the activation of anti-oxidant defence systems are coordinated by Yak1, Rim15 and Mck1 kinases to ensure quiescence entry and lifespan extension in yeast.

Indexed as

Carbohydrate MetabolismCarbohydratesCell CycleGene Expression Regulation, FungalGlycogenGlycogen Synthase Kinase 3Intracellular Signaling Peptides and ProteinsLongevityProtein KinasesProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionTrehaloseCarbohydratesGlycogenGlycogen Synthase Kinase 3Intracellular Signaling Peptides and ProteinsMCK1 protein, S cerevisiaeProtein KinasesProtein Serine-Threonine KinasesRim15 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTrehaloseYAK1 protein, S cerevisiae

Identifiers

PMID27923067
PMCPMC5140051
OpenAlexW2560664655

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.