Evidence map›Paper›PMID 27923041›Full record

ArticlePloS one2016

Crystal Structure of the Salmonella Typhimurium Effector GtgE.

Caishuang Xu, Guennadi Kozlov, Kathy Wong, Kalle Gehring, Miroslaw Cygler

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Speaking the host language: howMicrobiology (Reading, England) · 2023
    Review
  3. Review
  4. Structural and functional study of Legionella pneumophila effector RavA.Protein science : a publication of the Protein Society · 2021
    Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Caishuang XuDepartment of Biochemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Guennadi KozlovDepartment of Biochemistry, Groupe de recherche axé sur la structure des protéines, McGill University, Montreal, Quebec, Canada.
Kathy WongDepartment of Biochemistry, Groupe de recherche axé sur la structure des protéines, McGill University, Montreal, Quebec, Canada.
Kalle GehringDepartment of Biochemistry, Groupe de recherche axé sur la structure des protéines, McGill University, Montreal, Quebec, Canada.
Miroslaw CyglerDepartment of Biochemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
McGill University · CAUniversity of Saskatchewan · CA

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI THORNE, ROBERT E. · 1985 to 2011
$23.8M
NCRR NIH HHS P41 RR001646NIGMS NIH HHS DMR-0225180
6 · The paper itself

Abstract

Salmonella Typhimurium GtgE is an effector protein contributing to the virulence of this pathogen. It was shown to possess highly selective proteolytic activity against a subset of Rab proteins that helps in evasion of Salmonella-containing vacuole (SCV) fusion with lysosomes. Cys45, His151 and Asp169 are essential for proteolytic activity. The structure of a C-terminal fragment GtgE(79-214) indicated the presence of a papain-like fold. Here, we present the structure of GtgE(17-214) containing the fully assembled active site. The design of a proteolytically active and crystallizable GtgE construct was aided by NMR spectroscopy. The protein indeed displays papain-like fold with an assembled Cys-His-Asp catalytic triad. Like the full-length GtgE, the crystallizable construct showed low activity in vitro for its known substrates, Rab32 and Rab29. NMR titration experiments showed at most very weak binding of GtgE to the peptide encompassing the Rab29 cleavage site. In view of the low in vitro activity and poor substrate binding, we postulate that the function of GtgE in vivo as a proteolytic enzyme is dependent on other factor(s), such as a protein partner or interactions with the SCV membrane, which stimulate(s) GtgE activity in vivo.

Indexed as

AsparagineBacterial ProteinsCatalytic DomainCrystallography, X-RayCysteineHistidineModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein BindingProtein FoldingProtein Structure, Secondaryrab GTP-Binding ProteinsSalmonella typhimuriumAsparagineBacterial ProteinsCysteineHistidinerab GTP-Binding Proteins

Identifiers

PMID27923041
PMCPMC5140068
OpenAlexW2560162123

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.