Evidence map›Paper›PMID 27920338›Full record

ArticleThe Plant cell2016

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.

Luca Santuari, Gabino F Sanchez-Perez, Marijn Luijten, Bas Rutjens, Inez Terpstra, Lidija Berke, Maartje Gorte, Kalika Prasad, Dongping Bao, Johanna L P M Timmermans-Hereijgers and 16 more

Abstract read
In one paragraph

Article in The Plant cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed.

  1. Genome-Wide Analysis ofInternational journal of molecular sciences · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. PLETHORA-autophagy axis activates organ regeneration through ROS modulation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Stimulatory Effect of Aluminum in Root Development ofInternational journal of molecular sciences · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Mapping Quantitative Trait Loci inPlants (Basel, Switzerland) · 2025
    Article
  18. Article
  19. Review
  20. Review

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Luca SantuariPlant Developmental Biology, Wageningen University and Research Centre, Wageningen 6708PB, The Netherlands.ORCID 0000-0001-8784-2507
Gabino F Sanchez-PerezBioinformatics Group, Wageningen University and Research Centre, Wageningen 6708PB, The Netherlands.
Marijn LuijtenMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.ORCID 0000-0003-4476-0987
Bas RutjensPlant Developmental Biology, Wageningen University and Research Centre, Wageningen 6708PB, The Netherlands.
Inez TerpstraMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.ORCID 0000-0002-3085-2533
Lidija BerkeTheoretical Biology and Bioinformatics, Utrecht University, Utrecht 3584 CH, The Netherlands.ORCID 0000-0003-3842-9462
Maartje GorteMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.
Kalika PrasadMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.
Dongping BaoMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.
Johanna L P M Timmermans-HereijgersMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.
Kenichiro MaeoLaboratory of Biochemistry, Graduate School of Bioagricultural Science, Nagoya University, Nagoya 464-8601, Japan.
Kenzo NakamuraLaboratory of Biochemistry, Graduate School of Bioagricultural Science, Nagoya University, Nagoya 464-8601, Japan.
Akie ShimotohnoMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.
Ales PencikUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå SE-901 83, Sweden.
Ondrej NovakUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå SE-901 83, Sweden.ORCID 0000-0003-3452-0154
Karin LjungUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå SE-901 83, Sweden.ORCID 0000-0003-2901-189X
Sebastiaan van HeeschHubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht 3584 CT, The Netherlands.
Ewart de BruijnHubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht 3584 CT, The Netherlands.
Edwin CuppenHubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht 3584 CT, The Netherlands.
Viola WillemsenPlant Developmental Biology, Wageningen University and Research Centre, Wageningen 6708PB, The Netherlands.
Ari Pekka MähönenMolecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, The Netherlands.ORCID 0000-0001-6051-866X
Wolfgang LukowitzDepartment of Plant Biology, University of Georgia, Athens, Georgia 30602-7271.ORCID 0000-0002-5864-7240
Berend SnelTheoretical Biology and Bioinformatics, Utrecht University, Utrecht 3584 CH, The Netherlands.ORCID 0000-0002-5804-8547
Dick de RidderBioinformatics Group, Wageningen University and Research Centre, Wageningen 6708PB, The Netherlands.ORCID 0000-0002-4944-4310
Ben ScheresPlant Developmental Biology, Wageningen University and Research Centre, Wageningen 6708PB, The Netherlands ben.scheres@wur.nl renze.heidstra@wur.nl.ORCID 0000-0001-5400-9578
Renze HeidstraPlant Developmental Biology, Wageningen University and Research Centre, Wageningen 6708PB, The Netherlands ben.scheres@wur.nl renze.heidstra@wur.nl.ORCID 0000-0001-9032-5770

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Organ formation in animals and plants relies on precise control of cell state transitions to turn stem cell daughters into fully differentiated cells. In plants, cells cannot rearrange due to shared cell walls. Thus, differentiation progression and the accompanying cell expansion must be tightly coordinated across tissues. PLETHORA (PLT) transcription factor gradients are unique in their ability to guide the progression of cell differentiation at different positions in the growing Arabidopsis thaliana root, which contrasts with well-described transcription factor gradients in animals specifying distinct cell fates within an essentially static context. To understand the output of the PLT gradient, we studied the gene set transcriptionally controlled by PLTs. Our work reveals how the PLT gradient can regulate cell state by region-specific induction of cell proliferation genes and repression of differentiation. Moreover, PLT targets include major patterning genes and autoregulatory feedback components, enforcing their role as master regulators of organ development.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCell DifferentiationGene Regulatory NetworksPlant RootsTranscription FactorsArabidopsis ProteinsTranscription Factors

Identifiers

PMID27920338
PMCPMC5240741

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.