Evidence map›Paper›PMID 27919236›Full record

ArticleBMC evolutionary biology2016

The psoriasis-associated deletion of late cornified envelope genes LCE3B and LCE3C has been maintained under balancing selection since Human Denisovan divergence.

Petar Pajic, Yen-Lung Lin, Duo Xu, Omer Gokcumen

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

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  13. Evolutionary context of psoriatic immune skin response.Evolution, medicine, and public health · 2021
    Article
  14. Review
  15. Article
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  18. Article
  19. Article
  20. Complex Haplotypes ofG3 (Bethesda, Md.) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Petar PajicDepartment of Biological Sciences, University at Buffalo, Cooke 639, Buffalo, NY, 14260, USA.
Yen-Lung LinDepartment of Biological Sciences, University at Buffalo, Cooke 639, Buffalo, NY, 14260, USA.
Duo XuDepartment of Biological Sciences, University at Buffalo, Cooke 639, Buffalo, NY, 14260, USA.
Omer GokcumenDepartment of Biological Sciences, University at Buffalo, Cooke 639, Buffalo, NY, 14260, USA. omergokc@buffalo.edu.ORCID 0000-0003-4371-679X
University at Buffalo, State University of New York · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA common, 32kb deletion of LCE3B and LCE3C genes is strongly associated with psoriasis. We recently found that this deletion is ancient, predating Human-Denisovan divergence. However, it was not clear why negative selection has not removed this deletion from the population.

resultsHere, we show that the haplotype block that harbors the deletion (i) retains high allele frequency among extant and ancient human populations; (ii) harbors unusually high nucleotide variation (π, P < 4.1 × 10

conclusionsOur results are most parsimonious with the scenario where the LCE3BC deletion has evolved under balancing selection in humans. More broadly, this is consistent with the hypothesis that a balance between autoimmunity and natural vaccination through increased exposure to pathogens maintains this deletion in humans.

Indexed as

Evolution, MolecularGene DeletionAllelesCornified Envelope Proline-Rich ProteinsGene FrequencyGenetic Predisposition to DiseaseHumansPolymorphism, Single NucleotidePsoriasisSequence DeletionCornified Envelope Proline-Rich ProteinsLCE3B protein, humanLCE3C protein, humanAtopic dermatitisCopy number variationDefensinsGenomic structural variantsHLAHuman evolutionLCE3ANeanderthal

Identifiers

PMID27919236
PMCPMC5139038
OpenAlexW2560669756

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.