ArticleScientific reports2016
Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed, 49 citations in OpenAlex.
- Genome-wide identification and expression analysis of the3 Biotech · 2025Article
- Genome-wide analysis of the TCP transcription factor family in mung bean and its dynamic regulatory network under salt stress.Frontiers in plant science · 2025Article
- Article
- Identification and Expression Analysis of TCP Transcription Factors Under Abiotic Stress inPlants (Basel, Switzerland) · 2024Article
- Heterologous Expression of Chrysanthemum TCP Transcription Factor CmTCP13 Enhances Salinity Tolerance inPlants (Basel, Switzerland) · 2024Article
- Genome-wide analysis and expression profile of3 Biotech · 2024Article
- Article
- Adaptive protein evolution through length variation of short tandem repeats inScience advances · 2023Article
- Review
- Genome-wide identification and expression pattern analysis of the TCP transcription factor family inPlant signaling & behavior · 2022Article
- Comparative genomic investigation of TCP gene family in eggplant (Solanum melongena L.) and expression analysis under divergent treatments.Plant cell reports · 2022Article
- Article
- Genetic Architecture of Grain Yield-Related Traits in Sorghum and Maize.International journal of molecular sciences · 2022Review
- Evolutionary analyses and expression patterns of TCP genes in Ranunculales.Frontiers in plant science · 2022Article
- TCP Transcription Factors Involved in Shoot Development of Ma Bamboo (Frontiers in plant science · 2022Article
- Genome-wide diversity analysis of TCP transcription factors revealed cases of selection from wild to cultivated barley.Functional & integrative genomics · 2021Article
- Early Response of Radish to Heat Stress by Strand-Specific Transcriptome and miRNA Analysis.International journal of molecular sciences · 2019Article
- Genome-Wide Analysis of TCP Family Genes inInternational journal of molecular sciences · 2019Article
- Genome-wide identification and expression analyses of TCP transcription factor genes in Gossypium barbadense.Scientific reports · 2018Article
- MSD1 regulates pedicellate spikelet fertility in sorghum through the jasmonic acid pathway.Nature communications · 2018Article
Corrections and comments
- Erratum issued
Authors and funding
6 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sorghum is a highly efficient C4 crop with potential to mitigate challenges associated with food, feed and fuel. TCP proteins are of particular interest for crop improvement programs due to their well-demonstrated roles in crop domestication and shaping plant architecture thereby, affecting agronomic traits. We identified 20 TCP genes from Sorghum. Except SbTCP8, all are either intronless or contain introns in the untranslated regions. Comparative phylogenetic analysis of Arabidopsis, rice, Brachypodium and Sorghum TCP proteins revealed two distinct classes categorized into ten sub-clades. Sub-clade F is dicot-specific, whereas A2, G1 and I1 groups only contained genes from grasses. Sub-clade B was missing in Sorghum, whereas group A1 was missing in rice indicating species-specific divergence of TCP proteins. TCP proteins of Sorghum are enriched in disorder promoting residues with class I containing higher percent disorder than class II proteins. Seven pairs of paralogous TCP genes were identified from Sorghum, five of which seem to predate Rice-Sorghum divergence. All of them have diverged in their expression. Based on the expression and orthology analysis, five Sorghum genes have been shortlisted for further investigation for their roles in regulating plant morphology. Whereas, three genes have been identified as candidates for engineering abiotic stress tolerance.
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