Evidence map›Paper›PMID 27917864›Full record

ArticleNature communications2016

Multivalent contacts of the Hsp70 Ssb contribute to its architecture on ribosomes and nascent chain interaction.

Marie A Hanebuth, Roman Kityk, Sandra J Fries, Alok Jain, Allison Kriel, Veronique Albanese, Tancred Frickey, Christine Peter, Matthias P Mayer, Judith Frydman and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 28 citations in OpenAlex.

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  15. Article
  16. Chaperone Interactions at the Ribosome.Cold Spring Harbor perspectives in biology · 2019
    Review
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Marie A HanebuthDepartment of Biology, Molecular Microbiology, University of Konstanz, 78457 Konstanz, Germany.
Roman KitykCenter for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany.
Sandra J FriesDepartment of Biology, Molecular Microbiology, University of Konstanz, 78457 Konstanz, Germany.
Alok JainDepartment of Chemistry, University of Konstanz, 78457 Konstanz, Germany.
Allison KrielDepartment of Biology, Stanford University, Stanford, California 94305-5430, USA.
Veronique AlbaneseDepartment of Biology, Stanford University, Stanford, California 94305-5430, USA.ORCID http://orcid.org/0000-0002-5947-7415
Tancred FrickeyDepartment of Biology, Applied Bioinformatics, University of Konstanz, 78457 Konstanz, Germany.
Christine PeterDepartment of Chemistry, University of Konstanz, 78457 Konstanz, Germany.
Matthias P MayerCenter for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany.ORCID http://orcid.org/0000-0002-7859-3112
Judith FrydmanDepartment of Biology, Stanford University, Stanford, California 94305-5430, USA.ORCID http://orcid.org/0000-0003-2302-6943
Elke DeuerlingDepartment of Biology, Molecular Microbiology, University of Konstanz, 78457 Konstanz, Germany.
University of Konstanz · DEStanford University · USHeidelberg University · DE

Funding

PROTEIN FOLDING IN THE EUKARYOTIC CYTOSOLR01GM056433 · NIGMS · STANFORD UNIVERSITY · PI Judith Frydman · 1997 to 2026
$5.0M
Protein Folding in the Eukaryotic CytosolR37GM056433 · NIGMS · STANFORD UNIVERSITY · PI FRYDMAN, JUDITH · 2013 to 2022
$4.6M
NIGMS NIH HHS R01 GM056433NIGMS NIH HHS R37 GM056433
6 · The paper itself

Abstract

Hsp70 chaperones assist de novo folding of newly synthesized proteins in all cells. In yeast, the specialized Hsp70 Ssb directly binds to ribosomes. The structural basis and functional mode of recruitment of Ssb to ribosomes is not understood. Here, we present the molecular details underlying ribosome binding of Ssb in Saccharomyces cerevisiae. This interaction is multifaceted, involving the co-chaperone RAC and two specific regions within Ssb characterized by positive charges. The C-terminus of Ssb mediates the key contact and a second attachment point is provided by a KRR-motif in the substrate binding domain. Strikingly, ribosome binding of Ssb is not essential. Autonomous ribosome attachment becomes necessary if RAC is absent, suggesting a dual mode of Ssb recruitment to nascent chains. We propose, that the multilayered ribosomal interaction allows positioning of Ssb in an optimal orientation to the tunnel exit guaranteeing an efficient nascent polypeptide interaction.

Indexed as

Amino Acid MotifsAmino Acid SequenceComputer SimulationConserved SequenceGenetic Complementation TestGenetic PleiotropyHSP70 Heat-Shock ProteinsModels, MolecularMutationPeptidesPhenotypeProtein BindingRibosomesSaccharomyces cerevisiae ProteinsSubstrate SpecificityHSP70 Heat-Shock ProteinsPeptidesSaccharomyces cerevisiae ProteinsSSB1 protein, S cerevisiae

Identifiers

PMID27917864
PMCPMC5150220
OpenAlexW2559912926

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.