Evidence map›Paper›PMID 27917031›Full record

ArticleRemediation (New York, N.Y.)2016

A New Perspective on Sustainable Soil Remediation-Case Study Suggests Novel Fungal Genera Could Facilitate

L M Czaplicki, E Cooper, P L Ferguson, H M Stapleton, R Vilgalys, C K Gunsch

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Remediation (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
6.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

L M CzaplickiCandidate and Dean's Graduate Fellow in the Department of Civil and Environmental Engineering at Duke University in Durham, North Carolina. Her doctoral thesis focuses on fungal bioremediation of high molecular weight polycyclic aromatic hydrocarbon contaminated soils. She received her M.S. from Duke University and her B.S. in Environmental Engineering from The Ohio State University.
E Cooperresearch scientist and she manages the Duke Superfund Analytical Chemistry Core in Durham, North Carolina. Dr. Cooper is interested in analyzing environmentally important organic compounds in a variety of matrices including sediments, water, biological samples, and polyurethane foam. She received her Ph.D. in Environmental Sciences from Duke University. She earned her B.S in Plant Science and her M.S. in Plant and Soil Sciences from the University of Delaware.
P L Fergusonan associate professor of Environmental Chemistry and Engineering in the Department of Civil and Environmental Engineering and the Nicholas School of the Environment at Duke University in Durham, North Carolina. His research focuses on developing new methods for trace analysis of organic and nanoparticulate contaminants in the aquatic environment. Dr. Ferguson received his Ph.D. from the State University of New York at Stony Brook in Coastal Oceanography. He received his B.S. in Marine Science and Chemistry from the University of South Carolina.
H M Stapletonan associate professor in the Nicholas School of the Environment. Her research increases the understanding of the fate and transformation of organic contaminants in aquatic systems and indoor environments. Dr. Stapleton received her Ph.D. and M.S. from the University of Maryland, and her B.S. from Long Island University Southampton College.
R Vilgalysprofessor in the Department of Biology and adjunct professor in the Department of Molecular Genetics and Microbiology at Duke University in Durham, North Carolina. His research focuses on fungal evolution, genetics and systematics. Dr. Vilgalys received his Ph.D. in Botany from Virginia Polytechnic Institute and State University. He received his M.S. in Botany from Virginia Tech and his B.A. in Biology from the State University of New York College at Genesco.
C K Gunschan associate professor in the Department of Civil and Environmental Engineering at Duke University in Durham, North Carolina. Her research focuses on characterizing and engineering environmental microbiomes. Dr. Gunsch received her Ph.D. in Civil Engineering from the University of Texas at Austin. She received her M.S. in Environmental Engineering and Science from Clemson University and her B.S. in Civil Engineering from Purdue University.
Duke University · US

Funding

Zebrafish as a Detector of Organophosphate ExposureP42ES010356 · NIEHS · DUKE UNIVERSITY · PI AMY H HERRING · 2000 to 2026
$56.2M
NIEHS NIH HHS P42 ES010356
6 · The paper itself

Abstract

Deciding upon a cost effective and sustainable method to address soil pollution is a challenge for many remedial project managers. High pressure to quickly achieve cleanup goals pushes for energy-intensive remedies that rapidly address the contaminants of concern with established technologies, often leaving little room for research and development especially for slower treatment technologies, such as bioremediation, for the more heavily polluted sites. In the present case study, new genomic approaches have been leveraged to assess fungal biostimulation potential in soils polluted with particularly persistent hydrophobic contaminants. This new approach provides insights into the genetic functions available at a given site in a way never before possible. In particular, this article presents a case study where next generation sequencing (NGS) has been used to categorize fungi in soils from the Atlantic Wood Industries Superfund site in Portsmouth, Virginia. Data suggest that original attempts to harness fungi for bioremediation may have focused on fungal genera poorly suited to survive under heavily polluted site conditions, and that more targeted approaches relying on native indigenous fungi which are better equipped to survive under site specific conditions may be more appropriate.

Identifiers

PMID27917031
PMCPMC5130160
OpenAlexW2292198621

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.